New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1092557NA (NA)11 (0.020)
+GC		 6/108 NT NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 = 1092559 NA (NA)intergenic (+274/+462) ycdU/serX putative inner membrane protein/tRNA‑Ser

TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGGCAGCCCGTGCACGCAGTGCGCGGGCTGC                       >  1:32595841/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGGACGCAGTGAGCGGGCTGC                       >  1:12100314/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGC                       >  1:13725436/1‑67
 GCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCC                     >  1:2325716/1‑68
  CGTTCACGGTCTGTCCAACTGGCGCCCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCC                     >  1:10746580/1‑67
  CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGCCCGTGCACGCAGTGAGCGGGCTGCCC                     >  1:47432237/1‑67
  CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGGAGTGCGCGGGCTGCCC                     >  1:24951731/1‑67
  CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCC                     >  1:41307911/1‑67
      CACGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGG                >  1:41953524/1‑68
        CGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGGCCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC              >  1:31074737/1‑68
                   ACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGA   >  1:17104658/1‑68
                     TGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  >  1:9513839/1‑67
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.