New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581326 (0.470)23 (0.030)
+G		 12/110 NT 7.6% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 244 (0.350)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

GGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161516‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCA  >  CP009273/1162078‑1162130
                                                                  |                                                     
GGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGG                                                       >  1:53542383/1‑67
       AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGG                                               >  1:26601750/1‑68
       AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGG                                               >  1:32353584/1‑68
        AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACTGGT                                              >  1:30880012/1‑68
                GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGA                                         >  1:8645924/1‑65
                GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGAGGGGGGTAGA                                         >  1:26297865/1‑65
                GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACTGGTGTTGA                                         >  1:14257307/1‑65
                GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAC                                       >  1:50619396/1‑67
                         TTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGA                             >  1:22213450/1‑68
                          TGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACTGGTGTAGAACTATCCGCTGAA                            >  1:56528566/1‑68
                          TGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAA                            >  1:41297749/1‑68
                            ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGGGTAGAAATCTCCGCTGAATT                          >  1:56214340/1‑68
                            ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCAGCTGAATT                          >  1:55388598/1‑68
                             CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTCCGGGTGTAGAAATCTCCGCTGAAat                          >  1:5947215/1‑65
                                  CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACAA                    >  1:10265845/1‑68
                                  CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAA                                        >  1:18251669/1‑48
                                         AAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTC             >  1:55425002/1‑68
                                         AAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTC             >  1:30652503/1‑68
                                            AGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAA           >  1:1288125/1‑67
                                              ATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACCACGCGGTCAAGC         >  1:54867600/1‑67
                                              ATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGC         >  1:45973974/1‑67
                                              ATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTCAATTGCACAACGCGGTCAAGCA        >  1:13369921/1‑68
                                                   GATTGTCGGCGGCGGGGCGAGGGATGTAGAACTCTCCGCTGAATTGCACAACGCGGTGAAGCACCTGC   >  1:25419022/1‑68
                                                    ATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACCACGCGGTCAAGCAACTGCA  >  1:28704762/1‑68
                                                                  |                                                     
GGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161516‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCA  >  CP009273/1162078‑1162130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.