| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2680401 | NA (NA) | 24 (0.040) | 7/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 221 total aligned reads displayed.
TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < CP009273/2680405‑2680341 TCTGGGCGTGAAGCAGGAAGACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:32032424/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:29067844/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:24336555/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:23384137/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:41120187/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:2215232/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:26662429/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:20180074/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:54498762/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:33210802/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:6777774/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:8055928/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:43072949/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:10761217/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT < 1:4949852/68‑1 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT < 1:35099305/68‑1 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:27555085/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:31232037/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:17521850/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:5784834/1‑68 TGGGCGTGAAGCAGGAAAAAATTCATTACGAATGATTTGTCCCGAATAAGGTGCTGTAATTTGATGTT > 1:9196296/1‑68 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:35849195/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:39503697/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:2690642/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:13419959/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:40322674/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:7602938/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:16327868/1‑67 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:2096560/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:21506524/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:4550493/1‑68 cgcGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:11239394/4‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:4983990/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:47645975/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:47875009/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:19871207/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:49922876/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:51376674/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:52025636/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:10332851/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGCCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:53392571/1‑68 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG > 1:50648278/1‑68 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG > 1:18307112/1‑68 GAAGCAGGAAAACATTCATTACTAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:8802698/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGAT < 1:37054510/68‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGAT < 1:16937599/68‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:28317190/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:39695630/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:55239289/67‑1 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:14367366/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:17158114/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:4123038/1‑68 AGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATGT < 1:9379534/68‑1 AGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG < 1:32617837/67‑1 TGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGGTGTTTGCATGCGGCAACATCAAATT > 1:52609103/1‑67 GCCCGCATAAGGTGCTGTAATTTGATGTTGGCGGCTTTTTGCATCCGGCAACATCAAATTTCAGCA > 1:12142625/1‑66 GGTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGG > 1:53251911/1‑67 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTTTGCGGGCC > 1:23226408/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTGTGCGGGCC > 1:101945/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:18078340/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:33091672/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACAGCAAATTACAGCACCGTATGCGGGCC > 1:20871198/1‑68 AATTTGATGTTGCCGGATGTTTCCATCCGGCAAGATCAAATAACAGCGGCTTATGAGGGCCAAAGCct > 1:47001108/1‑66 TTTGATGTTGCCGGATGTTTCCGTCCTGCTACATCTATTTACAGCACCTTATGCGGGCCAAAGCAGTC > 1:10850331/1‑68 TTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTC > 1:9470129/1‑68 TTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCG > 1:57507457/1‑68 GTTGCCTGATGTTTCCATCGGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAAT < 1:23762532/67‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAA < 1:52371980/68‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGA < 1:48466034/67‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:56926662/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:15895939/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:21772179/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:2739541/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:44950915/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:26031041/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:39392804/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:19197827/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:33914393/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:11928694/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:3849272/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:56818460/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:711936/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGT‑ATGAATGTT < 1:19601309/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:43878842/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:42560618/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT > 1:50263898/1‑68 ATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTT > 1:55751083/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < 1:38990658/67‑1 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:15030640/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:33646897/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:2224735/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:25122403/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:42360226/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:53942026/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:44619369/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:17991694/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:2252789/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGACCAAAGCATTCGTAATGAATGTTTT > 1:7136619/1‑67 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:37507791/1‑66 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:47341698/1‑66 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < CP009273/2680405‑2680341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |