| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 27 (0.050) | 11/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 343 total aligned reads displayed.
CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAG < 1:521388/68‑1CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAG > 1:12365199/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:24650737/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:45518907/1‑68 AAGGCTGAAT‑AGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:28212986/68‑1 AGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:41480513/68‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:28580665/68‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:11632844/68‑1 GGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG > 1:179730/1‑67 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:49911488/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:57638295/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:16882901/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:55685360/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:45961791/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:37052671/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGC > 1:42228854/1‑67 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAACGGGCCGG > 1:46840560/1‑68 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:55251522/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:57124177/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:20237612/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:11072179/67‑1 GAATAAGGACCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATAAACGAAAAAAGGGCCGGA < 1:27920820/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:19342446/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:38085806/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:30022429/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:2911995/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:30825022/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:22071827/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:55813114/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:15347608/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:12044317/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:34691922/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:44054235/68‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:39569531/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:38654519/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:12990059/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:27751925/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:28351936/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:32762630/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:23058311/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:33530911/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:5239924/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:55013704/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:2345710/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:22287149/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:1741637/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:44984677/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:9014018/67‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:1023604/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:48254825/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:37491350/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:39943027/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:36290684/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:49416002/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:33072382/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:32303231/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:7046003/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:25769982/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:25392664/1‑68 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:23686219/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:6102655/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:18289017/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:14425520/68‑1 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:36642192/1‑67 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:7439780/1‑67 CAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:43541022/53‑1 CGCCTCAACGGCCAAGTGCCCAATCTCTATTTACGAAAAAAGGGCCGGATGTGCTGTAAATCCGGCCC > 1:31839567/1‑68 CGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAACGGCCCGATGTGCTGTACATCCGGCCC > 1:26703407/1‑68 CTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC > 1:18984540/1‑68 CGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGCTTGGGCACTTGGCCG > 1:10402454/1‑68 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:10677751/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:41092965/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:37714608/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG > 1:17248132/1‑68 CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT < 1:4740852/67‑1 CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT < 1:351244/67‑1 CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT < 1:20664494/67‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:26882090/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:6344166/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:13635002/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:58057151/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:21601766/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:42542928/68‑1 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:16476967/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:12727536/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:41741695/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:38876996/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:49329848/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:33830797/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:50632605/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:51425979/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:24404334/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTAGGCCGTTGAGGCGTTTGTCTC > 1:53590686/1‑68 TGTGCTGTACATCCGGCCCTTTATTCGTTAATAGAGATTGGGCACTTGGACCTTGACGCCTTTGTCTa > 1:43220098/1‑67 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG < 1:30295695/68‑1 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG < 1:7895728/68‑1 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG < 1:8582270/68‑1 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG < 1:2722881/68‑1 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:56517417/1‑68 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:11704083/1‑68 CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |