| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4034176 | NA (NA) | 48 (0.080) | 12/92 | NT | 9.0% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | CP009273 | = 4034200 | 594 (0.850) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
Only 100 of 1425 total aligned reads displayed.
GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGC > CP009273/4034124‑4034241 | aGGGTGGCGGGCAGGCCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:44835296‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGCCGCCCGCCATAAACAGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:27702580‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGCCGG < 1:22609953‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:32777320‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:4069681‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG < 1:43865364‑M2/68‑1 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:28645557‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:33661526‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:13774370‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:56832574‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:45656340‑M2/1‑67 (MQ=255) aGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG > 1:39723004‑M2/1‑67 (MQ=255) gggTGGCGGGCAGGCCGCCCGCCATAAACAGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG < 1:36491024‑M2/66‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGCCGGA < 1:52913831‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:41862909‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:44327126‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:21488404‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:1979742‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:30628460‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:9580457‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:18498262‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:46287900‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:11783696‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:17011359‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:20399658‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:15559695‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:5984006‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGA < 1:54832012‑M2/68‑1 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG > 1:7481657‑M2/1‑67 (MQ=255) gggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCAGACGGA < 1:23560684‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT < 1:15891083‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT < 1:38439046‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGAT < 1:52538668‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGAAGGAT < 1:477895‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCGGACGGAT < 1:8542572‑M2/68‑1 (MQ=255) ggTGGCGGGCAGGACGCCCCCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATACTGACGGAT < 1:10648206‑M2/68‑1 (MQ=255) tGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG > 1:29201995‑M2/1‑67 (MQ=255) tGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG > 1:46781036‑M2/1‑67 (MQ=255) tGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG < 1:3409298‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCATGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:42344915‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGCCGGATGG < 1:17572989‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:15154688‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:43140117‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:48840717‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:26102640‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:49088272‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:53245856‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:54401366‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:6316051‑M2/1‑68 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:30267227‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:51924132‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:5380861‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG > 1:55717602‑M2/1‑67 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:14271718‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:18068633‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:57406041‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:39050389‑M2/67‑1 (MQ=255) ggCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCGGACGGATGG < 1:13379587‑M2/67‑1 (MQ=255) gCGGTCAGGACGCCGGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:37887042‑M2/1‑67 (MQ=255) gCGGGCAGGACGCCCGCCTGAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCGGGCGGATGGgg < 1:51558065‑M2/68‑3 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGGATGAAATTAAGCAGAAGGCCATCCGGACGGATGG < 1:49471303‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCTAATTAAGAAGAAGGCCATCCTGCCGGATGG < 1:14759705‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC < 1:35449237‑M2/68‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGC > 1:37133217‑M2/1‑67 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:10058625‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:25393049‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:19310568‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:20987109‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:4123478‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGG < 1:2474479‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCAGACGGATGG < 1:24020007‑M2/66‑1 (MQ=255) gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCAACCAGACGGATGGCC < 1:48291454‑M2/68‑1 (MQ=255) cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC > 1:56275911‑M2/1‑67 (MQ=255) cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC > 1:26721620‑M2/1‑67 (MQ=255) cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC > 1:49895795‑M2/1‑67 (MQ=255) cGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGACGGCC > 1:7986688‑M2/1‑67 (MQ=255) gggCAGGACGCCCGCGATAAACTTCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT > 1:40307664‑M2/1‑67 (MQ=255) gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT > 1:51007317‑M2/1‑67 (MQ=255) gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT > 1:2309361‑M2/1‑67 (MQ=255) gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT > 1:45251187‑M2/1‑67 (MQ=255) gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCT > 1:57851398‑M2/1‑67 (MQ=255) aCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgc > 1:31228851‑M2/1‑61 (MQ=255) aCGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgc > 1:28337469‑M2/1‑61 (MQ=255) cATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgat > 1:29799024‑M2/1‑53 (MQ=255) cATAAACTGCCAGGCAGCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgat > 1:12498482‑M2/1‑53 (MQ=255) aTAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGa < 1:50424992/68‑1 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa < 1:699394/68‑1 (MQ=255) aCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGaaaaa > 1:35067623/1‑68 (MQ=255) gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcag > 1:34600742‑M2/1‑45 (MQ=255) cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTctgcttaatttgatgcctggcagt > 1:16596375‑M2/1‑43 (MQ=255) cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGGGCAGAAAAAAATg > 1:8957631/1‑67 (MQ=255) aTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc < 1:22079421/68‑1 (MQ=255) aTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc < 1:21776039/68‑1 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:55241986/1‑67 (MQ=255) gCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTg > 1:33271069/1‑67 (MQ=255) cAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgc > 1:11137069/1‑68 (MQ=255) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTgg < 1:3189395/66‑1 (MQ=40) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTgg < 1:47368192/66‑1 (MQ=40) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgc > 1:35956855/1‑67 (MQ=255) aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgc > 1:39461785/1‑67 (MQ=255) | GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGC > CP009273/4034124‑4034241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |