| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 15445 | 9 (0.010) | 6 (0.010) | 6/94 | NT | 44.3% | noncoding (59/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 15513 | NA (NA) | noncoding (127/1345 nt) | IS186 | repeat region | |||||
Only 100 of 404 total aligned reads displayed.
GGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAC > CP009273/15378‑15512 | ggggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA < 1:18200262‑M1/68‑1 (MQ=255)ggggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA < 1:31385155‑M1/68‑1 (MQ=255) gggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt > 1:51883636/1‑68 (MQ=40) gggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt > 1:48491926/1‑68 (MQ=40) ggATCCCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 1:45280833/1‑68 (MQ=255) ggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:43418231/67‑1 (MQ=40) ggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:44399784/67‑1 (MQ=40) ggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 1:57707033/1‑68 (MQ=40) ggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 1:46821961/1‑68 (MQ=40) ggATCACTCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:52910087/67‑1 (MQ=255) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa > 1:21289322/1‑68 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:37075737/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:23684266/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:22487561/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:50679032/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:46435222/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:28443846/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:54861667/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:55376875/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:31834656/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:11154472/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:35890781/67‑1 (MQ=39) aTCACTCCCATAAGCGCTAACTTAAGGGTTCTTGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:54312693/67‑1 (MQ=255) tCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:14462621/1‑68 (MQ=37) cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:12616423/1‑66 (MQ=31) cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:56392013/68‑1 (MQ=31) cTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCATGATATTATTTAACTTTCCGATGAAtt > 1:20583336/1‑66 (MQ=11) aaCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAagtatccagttcttcgggctta < 1:26576227‑M1/68‑23 (MQ=255) gtgGTATTACGCCTGATATGATTTAACGTGCCGAagtatccagttcttcgggcttaccaatatgggcc < 1:39249902‑M1/68‑35 (MQ=255) aCGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgag > 1:7161930‑M1/1‑9 (MQ=255) aCGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgag > 1:14223946‑M1/1‑9 (MQ=255) cgggccgAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:10790509‑M1/65‑61 (MQ=255) cGTGCCGAtgtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:30712987‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatggtccagaattgctgaccagttatcgtgaga < 1:9472547‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:34465064‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:35183014‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:36695143‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:36058891‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:41800930‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:45993191‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:47188950‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:48272247‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:49385013‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:51633723‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:5454023‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:56823684‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:8194998‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:8792073‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:16710924‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:25411811‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:25574816‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:24371495‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:26248914‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:22848741‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:22112617‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:19630001‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:17611435‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:17233852‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:15452095‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:28952823‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:15078285‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:13967300‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:29692961‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:30972233‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:32163364‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:12311291‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggctaaccaatatggcccagcattgctgaccacttatcgtgaga > 1:53308362‑M1/1‑8 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:21713427‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:19245943‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:6615643‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:10446126‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:43676186‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:30490410‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:37982423‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:40969802‑M1/1‑7 (MQ=255) tGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt > 1:5251972‑M1/1‑6 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:9134588‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:19105630‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:55225252‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:32719627‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:25789673‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:8561811‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:7397082‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:18710627‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:27227856‑M1/67‑63 (MQ=255) ccGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaa > 1:42254494‑M1/1‑4 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat > 1:42706223‑M1/1‑3 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:38260023‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:57378400‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:43164348‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:33658740‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:27334299‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:11803653‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:20043019‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:50341695‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagt < 1:27977308‑M1/53‑51 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:13665519‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:5936211‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:40181128‑M1/68‑67 (MQ=255) aagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattc > 1:10086275‑M1/1‑1 (MQ=255) | GGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAC > CP009273/15378‑15512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |