| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 232154 | 465 (0.660) | 25 (0.040) | 10/92 | NT | 5.9% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 416 (0.720) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
Only 100 of 986 total aligned reads displayed.
CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCC > CP009273/232087‑232221 | catcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:32604967‑M1/68‑1 (MQ=255)catcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:29949554‑M1/68‑1 (MQ=255)catcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:15507350‑M1/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:10436911/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:9652524/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:6396788/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:57741898/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:49091940/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:2742712/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:2522956/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:21362654/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:17541756/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:16513670/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:1199737/68‑1 (MQ=255) atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc < 1:14583022/68‑1 (MQ=255) tcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcc > 1:5917370/1‑67 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:47202113/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:13471510/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:23961153/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:38452943/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:4499948/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:39724708/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:20567724/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:51251601/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:19921890/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:33259228/1‑68 (MQ=255) aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt > 1:41975745/1‑68 (MQ=255) aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt > 1:28982126/1‑68 (MQ=255) aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt > 1:2561796/1‑68 (MQ=255) aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt > 1:4071573/1‑68 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:37546127/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:5624377/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:21826662/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:20095184/65‑1 (MQ=255) gttcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAAt < 1:17087335/65‑1 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:28149008‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:7387581‑M2/1‑63 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:35602712‑M2/1‑63 (MQ=255) tcgttTTCCGGGGGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:30259389‑M2/1‑63 (MQ=255) tcgttTTCCAGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 1:19107401‑M2/1‑63 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:36591860‑M2/1‑62 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:53766603‑M2/1‑62 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:47505166‑M2/1‑62 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:47819743‑M2/1‑62 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:24170252‑M2/1‑62 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:1075158‑M2/1‑62 (MQ=255) cgttTTCCGGGTGTCCGGCATGGCCTTTAACCCAATCCCATTTGATTTGATGCTGCCCCAATgcagca > 1:28529609‑M2/1‑62 (MQ=255) gttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcat > 1:48593122‑M2/1‑61 (MQ=255) gttTTCCGGGTGTCCGGCATGGCCTTAAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcat > 1:44610900‑M2/1‑61 (MQ=255) ttttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatc < 1:9002347‑M2/68‑9 (MQ=255) ttttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatc < 1:22539897‑M2/68‑9 (MQ=255) ttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatcaa < 1:43358973‑M2/68‑11 (MQ=255) ccGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGa < 1:464745/68‑1 (MQ=255) ccGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGa < 1:11754745/68‑1 (MQ=255) gggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACg > 1:41381116/1‑68 (MQ=255) ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt > 1:6687047/1‑68 (MQ=255) tgtCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatcaaatcaaa > 1:35332694‑M2/1‑51 (MQ=255) cATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAgaga > 1:22136640/1‑68 (MQ=255) ggCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagcatcaaatcaaatgggaatgggt > 1:33617114‑M2/1‑41 (MQ=255) ggCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCg > 1:34492385/1‑68 (MQ=255) gCCTTTAACCCATTCCCCTTTGATTTGATGCTGCCCCAATgcagcatcaaatcaaatgggaatgggt > 1:8670059‑M2/1‑40 (MQ=255) cTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACa > 1:55735447/1‑68 (MQ=255) tttAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAt < 1:38784913/68‑1 (MQ=255) tAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttt < 1:42509260/68‑1 (MQ=255) aaCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttt < 1:29713418/68‑1 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:54263648/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:532773/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:27022808/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:56591086/1‑68 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttttt > 1:13926253/1‑68 (MQ=255) cccattcccattTGATTTGATGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggcca > 1:33943461‑M1/1‑26 (MQ=255) cccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:34934593/1‑68 (MQ=255) cccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:3998559/1‑68 (MQ=255) cccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:4420857/1‑68 (MQ=255) ccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:43010969/1‑67 (MQ=255) ccattcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAtttttt > 1:15876543/1‑67 (MQ=255) tcccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTgg < 1:14966904/68‑1 (MQ=255) cccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGt < 1:46181004/68‑1 (MQ=255) cccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGt > 1:57403127/1‑68 (MQ=255) cccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGt > 1:49717794/1‑68 (MQ=255) cccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGt > 1:49959193/1‑68 (MQ=255) ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGCCATTTTTTACTGGtt > 1:36025657/1‑68 (MQ=255) ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtt > 1:55044327/1‑68 (MQ=255) ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtt > 1:10172557/1‑68 (MQ=255) ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtt > 1:51843149/1‑68 (MQ=255) gatttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGt < 1:3154581/68‑1 (MQ=255) ttgatGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaa < 1:8269386‑M1/68‑59 (MQ=255) gatGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaa < 1:23612937‑M1/68‑61 (MQ=255) atGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaac > 1:30871006‑M1/1‑7 (MQ=255) atGCTGCattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaac > 1:11154207‑M1/1‑7 (MQ=255) tgctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacg < 1:52579436‑M1/68‑63 (MQ=255) tgctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacg > 1:26330048‑M1/1‑6 (MQ=255) tgctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGt > 1:12993354/1‑68 (MQ=255) tgctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGt > 1:210507/1‑68 (MQ=255) tgctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGt > 1:38122006/1‑68 (MQ=255) tgctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGGTGTTTGTCTGCGGt > 1:32142809/1‑68 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 1:45541055‑M1/1‑5 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCTGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGtt > 1:50432504/1‑68 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCAGAGCTCGACATTTTTTACTGGTTTTTTGTCTGCGGtt > 1:18538864/1‑68 (MQ=255) gctgcCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGtt > 1:55200236/1‑68 (MQ=255) | CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCC > CP009273/232087‑232221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |