New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =383 (0.550)50 (0.080) 12/96 NT 12.3% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 384 (0.640)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 537 total aligned reads displayed.

TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362
                                                                   |                                                                  
 cagttgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccgc                                                                   >  1:51755501‑M1/67‑68 (MQ=255)
  agttgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccgcc                                                                  <  1:23119745‑M1/3‑1 (MQ=255)
  agttgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccgcc                                                                  <  1:36331202‑M1/3‑1 (MQ=255)
  aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGcc                                                                  >  1:30230600/1‑68 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:32602716‑M1/6‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               >  1:51432310/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:11842597/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               >  1:38175347/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCcgcg                                                               <  1:57758320/68‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:51887290‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:14959050‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:20372890‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:18822517‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacacagcgcccGCCGCGGc                                                             <  1:28854530‑M1/8‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:3558076/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:2201230/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGc                                                             <  1:38964550/68‑1 (MQ=255)
       gctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             <  1:52843667‑M1/8‑1 (MQ=255)
        ctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                             >  1:56416390‑M1/60‑67 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:47999094/1‑68 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:38581705/1‑68 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCAAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:27705685/1‑68 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCCGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:8596885/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:4084370/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:7822841/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:30609286/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:7546991/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:16887729/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:35211295/67‑1 (MQ=255)
            aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt                                                        >  1:51053800/1‑68 (MQ=255)
              ggggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaa                                                      >  1:54428714/1‑68 (MQ=255)
               gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:5860443/1‑68 (MQ=255)
               gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:47080920/1‑68 (MQ=255)
               gggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:17579147/1‑68 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCTGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:44462107/67‑1 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:42530366/1‑66 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:1326352/1‑66 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACGACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:21086955/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:31545075/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:56923690/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:17271334/67‑1 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:29591585/1‑66 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:44060141/1‑66 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:22672208/1‑66 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             >  1:11045486/1‑68 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             <  1:375628/68‑1 (MQ=255)
                        tAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTa                                            >  1:46056601/1‑68 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:10617773/68‑1 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:43668761/68‑1 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:45128175/68‑1 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:23481749/1‑68 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:54795613/1‑67 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:2507939/1‑67 (MQ=255)
                             ttCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCg                                        >  1:24568216/1‑67 (MQ=255)
                                   gaTTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgc                                 >  1:48802466/1‑68 (MQ=255)
                                      tgcagccccaccagacgcacaccgcgcccGCCGCGGGGGAATAAAGGTGATCTAATCGCCGCcgcgcg                              <  1:4650902‑M1/39‑1 (MQ=255)
                                      tgcagccccaccagacgcacaccgcgcccGCCGCGGGGGAATAAAGCGGCTCTAATCGCCACcgcgcg                              <  1:939792‑M1/39‑1 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGt                             <  1:32024824‑M1/40‑1 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCGGAAGATAGCTGATCTAATCGCCCccgggcgg                             <  1:41523687‑M1/40‑2 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:9643729/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:15380011/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:28434808/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:29194935/1‑67 (MQ=255)
                                           ccccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          <  1:22561863‑M1/43‑1 (MQ=255)
                                            cAAACCACCCACTCGCACCTCGGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                        <  1:42033174/68‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:49491052/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:16483356/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAcc                       <  1:34317236/68‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                        <  1:14577761/67‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                        <  1:32873596/67‑1 (MQ=255)
                                               accagacgcacaccgcgcccGCCGCGGCTGCATAAAGCTGATCTAATCGCCCCCGCGCGGAAAACCTg                     <  1:34892594‑M1/48‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:47880147/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:40200933/68‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    >  1:19361057/1‑68 (MQ=255)
                                                   cccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGAt                 >  1:20793109/1‑68 (MQ=255)
                                                    ccAGGAGCGCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg                >  1:1235970/1‑68 (MQ=255)
                                                    ccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg                >  1:49175550/1‑68 (MQ=255)
                                                     cgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCCCCGCGCTTAAACCCTGGGATGa               <  1:17998722‑M1/54‑1 (MQ=255)
                                                     cgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGa               <  1:900093‑M1/54‑1 (MQ=255)
                                                     cAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGa               >  1:29869392/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:6223648/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:56048568/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:26393782/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:2682686/1‑68 (MQ=255)
                                                        acaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             <  1:25833045‑M1/56‑1 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:53110948/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:53883390/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:19611841/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:45460339/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:6617719/1‑67 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcg            >  1:42916962/1‑67 (MQ=255)
                                                         aGCACGGCTGGCCGCGGCTGAATACAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             <  1:39427402/66‑1 (MQ=255)
                                                          gCACGTCTGGCCGCGCCGGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAccc           <  1:12951716/67‑3 (MQ=255)
                                                          accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc          <  1:15788202‑M1/59‑1 (MQ=255)
                                                             cGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcg       <  1:36756321/68‑1 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcg       >  1:10102017/1‑67 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcgg      <  1:52545204/68‑1 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcgg      <  1:47501368/68‑1 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCgcggc     >  1:2387177/1‑68 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:50321347/68‑1 (MQ=255)
                                                                   |                                                                  
TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.