| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 964816 = | 276 (0.390) | 18 (0.030) | 8/94 | NT | 6.8% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 261 (0.440) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
Only 100 of 473 total aligned reads displayed.
CAGGTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAT > CP009273/964750‑964883 | gcggggtttgtttaacaggccttgtgcggcaaggtgaagattacgcgcatcagcaagggagaggtGCg < 1:19053917‑M1/3‑1 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:27516255/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:23609142/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:24201676/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:19929763/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:52331769/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:24673087/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:25112872/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:25361342/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:15019443/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:30262293/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:45676250/1‑67 (MQ=255) ggTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCcgcg > 1:8536988/1‑67 (MQ=255) ggtttgtttaacaggccttgtgcggcaaggtgaagattacgcgcatcagcaagggagaggtGCGGCa < 1:57053607‑M1/6‑1 (MQ=255) ggtttgtttaacaggccttgtgcggcaaggtgaagattacgcgcatcagcaagggagaggtGCGGCa < 1:3327487‑M1/6‑1 (MQ=255) gatgaACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCa > 1:51663692/1‑67 (MQ=255) tgaACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGc < 1:31238346/67‑1 (MQ=255) tgaACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCg > 1:26647438/1‑68 (MQ=255) tgaACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCg < 1:35970279/68‑1 (MQ=255) aaCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGt > 1:41504191/1‑67 (MQ=255) aaCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGt > 1:32097366/1‑67 (MQ=255) aaCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGt > 1:39216145/1‑67 (MQ=255) aCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTc > 1:44604059/1‑68 (MQ=255) aCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTc > 1:51349459/1‑68 (MQ=255) aCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTc > 1:16545148/1‑68 (MQ=255) aCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTc > 1:39726650/1‑68 (MQ=255) aCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTc > 1:10028007/1‑68 (MQ=255) aCCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTc > 1:46713153/1‑68 (MQ=255) cGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTg > 1:8942205/1‑68 (MQ=255) cTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGa > 1:27980838/1‑68 (MQ=255) cTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGa < 1:49064546/68‑1 (MQ=255) tGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAg > 1:38523342/1‑68 (MQ=255) tGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAg > 1:52913452/1‑68 (MQ=255) gCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGgtgt < 1:18457832/68‑1 (MQ=255) ttACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTc < 1:55811932/67‑1 (MQ=255) ttACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCa < 1:13815338/68‑1 (MQ=255) aCGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATg > 1:23314439/1‑68 (MQ=255) cGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGa > 1:42992847/1‑68 (MQ=255) cAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAAt > 1:56095770/1‑68 (MQ=255) cAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAAt > 1:33789934/1‑68 (MQ=255) cAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAAt > 1:38044830/1‑68 (MQ=255) ccTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCt > 1:44290284/1‑67 (MQ=255) ccTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCt > 1:46381280/1‑67 (MQ=255) ccTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCt > 1:40972015/1‑67 (MQ=255) ccTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCt > 1:45261341/1‑67 (MQ=255) ccTAGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCAAGAATGTCGCt > 1:22139792/1‑67 (MQ=255) agattacgcgcatcagcaagggagaggtGCGGCCGCGGTGGATTGGTGGAGTCATGAATGTGGCTGcc < 1:10311352‑M1/40‑1 (MQ=255) cTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGc > 1:40447060/1‑67 (MQ=255) tGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCa < 1:28175891/67‑1 (MQ=255) tGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCa > 1:22803216/1‑67 (MQ=255) tGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCa < 1:53782962/67‑1 (MQ=255) tGGCTGCTGGCAACTAGTTACGCCCCGGCAGCGTTCGATTGATGGAGTCATGAATGGCGCTGCCGCa < 1:39384152/67‑1 (MQ=255) ggCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGcggc < 1:817813/68‑4 (MQ=255) ggCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCa > 1:3430239/1‑66 (MQ=255) ggCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCa > 1:20690459/1‑66 (MQ=255) ggCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCAcc < 1:42464274/68‑1 (MQ=255) gcgcatcagcaagggagaggtGCGGCAGCGTTCGATTGATGGAGTGATGAATGTCGCTGCCGCAcc < 1:47177708‑M1/45‑1 (MQ=255) ttCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACctct < 1:49308370/68‑1 (MQ=255) ttCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACctct < 1:26905852/68‑1 (MQ=255) ttCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACctct < 1:58056856/68‑1 (MQ=255) tCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCtctc < 1:36359752/68‑1 (MQ=255) cTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTcc < 1:41874116/68‑1 (MQ=255) cTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTcc < 1:54898012/68‑1 (MQ=255) tGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTccc < 1:2970039/68‑1 (MQ=255) tGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGACGGAGTCATGAATGTCGCTGCCGCACCTCTccc < 1:14081544/68‑1 (MQ=255) ggCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCt > 1:54581871/1‑68 (MQ=255) ctaCTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:9786091/65‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:37487462/67‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:644739/67‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:13399723/67‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:17225098/67‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:17842050/67‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:50886975/67‑1 (MQ=255) cAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCtt < 1:4877631/67‑1 (MQ=255) aaCTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGc < 1:49628070/68‑1 (MQ=255) ggagaggtGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGAt < 1:55333416‑M1/59‑1 (MQ=255) ttACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATgc > 1:7526838/1‑68 (MQ=255) agaggtGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATgc < 1:15752304‑M1/61‑1 (MQ=255) aCGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATgcgc < 1:12444580/68‑1 (MQ=255) cgccgcGGCAGCGTTCGATTGATGGAGTCATGCATGTCGCTGCCGCCCCTCTCCCTTGCTGATGcgcg > 1:47729363/1‑68 (MQ=255) cgccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGcgcg > 1:20942170/1‑68 (MQ=255) cgccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGcgcg > 1:1971801/1‑68 (MQ=255) cgccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGcgcg > 1:13167709/1‑68 (MQ=255) cgccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACATCTCCCTTGCTGATGcgcg > 1:28388573/1‑68 (MQ=255) ggtgcgGCAGCGTTAGATTGATTGAGTCATGAATGTCCCTGCCGCACCACTCCCTTGCTGATGCGCGt > 1:29043891/4‑68 (MQ=255) ggtGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGt < 1:30039183‑M1/65‑1 (MQ=255) gccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCTCGt > 1:27228538/1‑68 (MQ=255) gccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGt > 1:30767766/1‑68 (MQ=255) gccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGt > 1:34956813/1‑68 (MQ=255) gccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCACTGCCGCACCTCTCCCTTGCTGATGCGCGt < 1:12769848/68‑1 (MQ=255) ccgcGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTa > 1:48427889/1‑68 (MQ=255) tGCGGCAGCGTTCGATTGATGGAGTCATGAATTTCGCTGCCGCACCTCTCCCATTCTGatgcgcggaa < 1:31518047‑M1/67‑4 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:37071266‑M1/1‑68 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:25915204‑M1/1‑68 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:11633838‑M1/1‑68 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:7106769‑M1/1‑68 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:43348021‑M1/1‑68 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:6062632‑M1/1‑68 (MQ=255) GCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:35501004‑M1/1‑68 (MQ=255) GCGCCAGCGTTCGATGGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAt > 1:43842516‑M1/1‑68 (MQ=255) | CAGGTGATGAACCAGCGAAACTGCTTACGCAACTAACCTTGCTGGCTTCTGGCAACTAGTTACGCCGCGGCAGCGTTCGATTGATGGAGTCATGAATGTCGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAT > CP009273/964750‑964883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |