| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1948783 | NA (NA) | 12 (0.020) | 4/98 | NT | NA | noncoding (98/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 1687 total aligned reads displayed.
ACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCT > CP009273/1948718‑1948850 | cAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGc < 1:38235654/68‑1 (MQ=255) aaaaCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCt < 1:37759413/68‑1 (MQ=255) aCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCttt > 1:40817040/1‑67 (MQ=255) aCCTTGCTAATTCAATATATTGCAGGCACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCttt > 1:54151766/1‑67 (MQ=255) cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACg > 1:42988246/1‑68 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:10003674/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:9075677/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:12725416/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:45699628/67‑1 (MQ=255) tAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTg < 1:52390003/67‑1 (MQ=255) tCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATa > 1:34390357/1‑67 (MQ=255) atatatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCt < 1:11020233/68‑1 (MQ=255) atatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:28096429/1‑68 (MQ=255) atatTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCa > 1:17749782/1‑68 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:41874151/1‑67 (MQ=255) gCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAgcgc > 1:6368243/1‑67 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:16631391/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:35396406/1‑68 (MQ=255) aGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCg > 1:37191990/1‑68 (MQ=255) ggACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:18548918/1‑68 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGTCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:33392615/1‑67 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:51628943/1‑67 (MQ=255) gACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGtt > 1:7490376/1‑67 (MQ=255) aCTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGttt > 1:20487417/1‑67 (MQ=255) tGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCgg > 1:50496100/1‑67 (MQ=255) tGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCgg > 1:45194846/1‑67 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATATCCTCAGCGCCCGTTTCCGGgc < 1:48362921/68‑1 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCgggt > 1:11946589/1‑67 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:17284987/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc < 1:30700935/68‑1 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:23456910/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:5925869/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:5655188/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:5480217/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:16254433/1‑68 (MQ=255) gTAGGCCTGATAAGCATAGAGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:9480646/1‑68 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:22621472/1‑67 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:44115886/1‑67 (MQ=255) tAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGgc > 1:19960694/1‑67 (MQ=255) ggCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCt > 1:5602943/1‑68 (MQ=255) ggCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCt > 1:36736557/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCt < 1:56846137/66‑1 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:46313762/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:23025860/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:21865145/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:43595656/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:44894813/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:20834238/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:26874067/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:49759288/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:18966410/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:14456817/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:55490920/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:13499123/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:13066637/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:30213346/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:32129976/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:31258167/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:26126981/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:26557859/1‑68 (MQ=255) ccTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt > 1:2485939/1‑68 (MQ=255) cTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt < 1:2883174/67‑1 (MQ=255) cTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt < 1:24088786/67‑1 (MQ=255) cTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTAt < 1:57416550/67‑1 (MQ=255) tAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACg > 1:11523577/1‑68 (MQ=255) tAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACg < 1:49354358/68‑1 (MQ=255) aGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTc < 1:46838312/68‑1 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGGGCTATTCACGTCtt > 1:27723506/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCtt > 1:21411650/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCtt > 1:25363955/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCtt > 1:40209601/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCtt > 1:33829999/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCtt > 1:14972521/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCtt > 1:5210397/1‑67 (MQ=255) aTAGCGCATCAGGCAGCTTTACGTTAGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCTCGTCTTa > 1:47244977/1‑68 (MQ=255) gcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACg > 1:13963140/1‑65 (MQ=255) gcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACg > 1:39050465/1‑65 (MQ=255) gcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACg > 1:15530910/1‑65 (MQ=255) gcATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACg > 1:31609017/1‑65 (MQ=255) tCAGGCctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacg > 1:42482165‑M1/1‑6 (MQ=255) tCAGGCctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacg > 1:34881522‑M1/1‑6 (MQ=255) tCAGGCctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacg > 1:8357726‑M1/1‑6 (MQ=255) tCAGGCctacatgatttctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttac > 1:48971420‑M1/1‑6 (MQ=255) aGGCctacgtggtttatgcaatatattgaatttgcatggtattgtaggccagataagacgttcacgtc > 1:41496660‑M1/1‑4 (MQ=255) aGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACa > 1:57738166/1‑68 (MQ=255) aGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACa > 1:53607830/1‑68 (MQ=255) cgcctacatgatatctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttacgcc > 1:32659244‑M1/2‑3 (MQ=255) cctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacgtcgca > 1:4768604‑M1/1‑1 (MQ=255) cctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacgtcgca > 1:52926790‑M1/1‑1 (MQ=255) cctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacgtcgca > 1:12386613‑M1/1‑1 (MQ=255) cctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacgtcgca > 1:6978746‑M1/1‑1 (MQ=255) cctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacgtcgca > 1:19367858‑M1/1‑1 (MQ=255) cctacgtggtttatgcaatatattgaatttgcatggtcttgtaggccagataagacgttcacgtcgca > 1:1826600‑M1/1‑1 (MQ=255) cctacatgatttctgcaatatattgaatttggaagagtttgtaggccggataaggcgtttacgccgc < 1:39908121‑M1/67‑67 (MQ=255) cctacatgatttctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttacgccgca > 1:10587466‑M1/1‑1 (MQ=255) cctacatgatttctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttacgccgca > 1:35937988‑M1/1‑1 (MQ=255) cctacatgatttctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttacgccgca > 1:2951965‑M1/1‑1 (MQ=255) cctacatgatttctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttacgccgca > 1:25793343‑M1/1‑1 (MQ=255) cctacatgatttctgcaatatattgaatttggaagaatttgtaggccggataaggcgtttacgccgca > 1:51157736‑M1/1‑1 (MQ=255) cAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAgc < 1:39456142/67‑1 (MQ=255) | ACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCT > CP009273/1948718‑1948850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |