| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2145164 | NA (NA) | 17 (0.030) | 8/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 641 total aligned reads displayed.
GACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCA > CP009273/2145098‑2145231 | gacgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAt < 1:31497142/68‑1 (MQ=255) cgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAttg > 1:39646160/1‑68 (MQ=255) gaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAttgt < 1:4651838/68‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:13628244/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:23160517/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:24349252/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTc < 1:41959529/68‑1 (MQ=255) agCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAgacaacaattca > 1:47119162‑M1/1‑56 (MQ=255) aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccg > 1:57932103‑M2/1‑60 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTTTCttcaaccgc > 1:13018041‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTGttcaaccgc > 1:56331708‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:12534961‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:25409672‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:32637409‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:11837528‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:16702398‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTCGTCttcaaccgc > 1:9007834‑M2/1‑59 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:5380981‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc > 1:20270746‑M2/1‑58 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:12823676‑M2/68‑11 (MQ=255) tAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCAt < 1:19875096/68‑1 (MQ=255) tAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCAt < 1:6104563/68‑1 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgag > 1:26711270/1‑68 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgag > 1:15376051/1‑68 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgaga < 1:33678868/68‑1 (MQ=255) cGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaa < 1:17231571/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:37168720/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAgacaacaattccaccgccagtttaaacaata > 1:40725272‑M1/1‑37 (MQ=255) cAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:29682085/1‑67 (MQ=255) cAGCCGTAATATTTATTGTTTAAACTGGCGGTTGAAATGTTGTCTACAAGCGCCATGAGAAactcac > 1:12196483/1‑67 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAAgacaacaattcaaccgccagtttaaacaataaat > 1:48431304‑M1/1‑34 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:36607917/1‑65 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:55670460/1‑65 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:54806789/65‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCActct < 1:38972217/66‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:2261386/1‑67 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg < 1:33337163/67‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:4279209/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:48923697/68‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGccc < 1:7981382/67‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca < 1:47704434/68‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca < 1:21299864/68‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:2072706/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:52839108/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:35301015/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTATGCCcaca > 1:28780/1‑68 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:52093282/1‑67 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:10884927/1‑67 (MQ=255) tttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc < 1:23757336/68‑1 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 1:41217167/68‑1 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:46018615/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:55251068/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:15805503/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:41437221/1‑67 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcgc < 1:11122354/68‑1 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcgc < 1:21779440/68‑1 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:10180234/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:14516677/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTAAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:48197321/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTAAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:1955717/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:34143494/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:43283465/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:51084504/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:34665869/1‑68 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGc < 1:56573955/68‑1 (MQ=255) aaaCTGGCGGTTGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaa > 1:53203581‑M2/1‑23 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:6820085/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:57287177/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:50228276/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:9659117/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:18725569/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:27156104/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:14180282/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:17763691/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:16389311/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:33826508/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:37673687/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACCCACTCTGCCCACAGCGCCAGTGCCAACg < 1:8315535/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:45965590/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:18303722/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:49764699/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:13452024/68‑1 (MQ=255) ggCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaat < 1:32029039‑M1/68‑59 (MQ=255) ggCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaat < 1:26164823‑M1/68‑59 (MQ=255) ggCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:1497640/68‑1 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgcactaatt > 1:3828872‑M1/1‑9 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:35776529‑M1/1‑9 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:7420250‑M1/1‑9 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:19214050‑M1/1‑9 (MQ=255) ggTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtttt < 1:44886019/67‑1 (MQ=255) ttGATTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:39264351/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:45359391/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:25001276/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:30728296/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:51598496/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:4412103/67‑1 (MQ=255) tGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgct < 1:54517786‑M1/68‑65 (MQ=255) aagacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgctct > 1:40978063‑M1/1‑2 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:27814392/68‑1 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:40093422/68‑1 (MQ=255) | GACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCA > CP009273/2145098‑2145231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |