| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2749471 | 517 (0.740) | 39 (0.070) | 9/90 | NT | 9.0% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 369 (0.660) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
Only 100 of 1235 total aligned reads displayed.
TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 | tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:28127684/1‑68 (MQ=255) cccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:25877779/1‑67 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:10924450/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:11824110/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:9319653/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:25455452/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:51844379/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:17200017/68‑1 (MQ=255) cgcgAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGct < 1:7824502/68‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct < 1:35152046/67‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTa > 1:23264638/1‑68 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:1328468/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:10104385/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:46254697/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGtt < 1:55396573/68‑1 (MQ=255) agagTACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcg > 1:8176278‑M2/1‑66 (MQ=255) agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAc > 1:47875463‑M2/1‑66 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:54155708‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:9000620‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:50330634‑M2/68‑4 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:6362358‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:11553747‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:20284365‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:55898840‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:57373469‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg < 1:32719601‑M2/67‑7 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:53303335‑M2/1‑61 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:20936476‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:24213301‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:29127324‑M2/1‑60 (MQ=255) aaTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcct > 1:15692378‑M2/1‑58 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:45066720/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:38358635/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:8593231/1‑68 (MQ=255) tAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaaa < 1:45705690/68‑1 (MQ=255) aaaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAAc < 1:34470094/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAAc > 1:18713978/1‑67 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:376345/68‑1 (MQ=255) aTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGc < 1:17683453/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTCCGTGGGGCCTAAACGcc > 1:25098993/1‑67 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:2786028/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:42353955/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:47406741/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:23605820/68‑1 (MQ=255) cGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatggg > 1:53806312‑M2/1‑49 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag > 1:49880827/1‑68 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag < 1:15310123/68‑1 (MQ=255) ccTTTTAGGCCCATTGATAGGCCCAACGtaaaaaatagagcttttcgttgggcctatcaatgggccta > 1:51332481‑M1/1‑28 (MQ=255) ccTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag > 1:28591453/1‑67 (MQ=255) cTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGAc < 1:40864029/68‑1 (MQ=255) tttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTc < 1:22331281/68‑1 (MQ=255) ggCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggt > 1:10454577‑M1/1‑21 (MQ=255) ggCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggt > 1:29707534‑M1/1‑21 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:34163302/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:42834213/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:43543657/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:4441681/1‑68 (MQ=255) cccATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcggtaaaggttcg > 1:48134487‑M1/1‑19 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:7083113/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:3652029/1‑68 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg < 1:31678691/67‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg < 1:31506602/68‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:4867092/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:33076548/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:26880235/1‑68 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:55194173‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:41898548‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:14699536‑M1/1‑8 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:26450925‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:56750363‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:33507643‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:21387691‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:43957694‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:37114009‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:40558642‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:14189141‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:38845674‑M1/67‑1 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:39523897‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:54776104‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:58014352‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:30785941‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:3209154‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:46934030‑M1/1‑7 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAAcc < 1:12285260‑M1/68‑1 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAAcc < 1:41404310‑M1/68‑1 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAAAGCAGGGAGACTCCCCATGGCAAGAAAAAcc < 1:49520280‑M1/68‑1 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt < 1:43236925‑M1/67‑62 (MQ=255) ccAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:16170606‑M2/1‑23 (MQ=255) CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGCCTCCCCATGGCATGAAAAACCa < 1:19050500‑M1/68‑1 (MQ=255) CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa < 1:4016031‑M1/68‑1 (MQ=255) CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa < 1:52746005‑M1/68‑1 (MQ=255) aCGAAAAGCCCTATTGTTTAcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc > 1:37975583‑M2/1‑20 (MQ=255) ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc > 1:52430299‑M1/1‑68 (MQ=255) ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc > 1:19912872‑M1/1‑68 (MQ=255) ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc > 1:6544336‑M1/1‑68 (MQ=255) cGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:50921094‑M1/1‑2 (MQ=255) CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc < 1:49061672‑M1/68‑1 (MQ=255) gtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:36202278‑M1/1‑1 (MQ=255) gtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:12659931‑M1/1‑1 (MQ=255) GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg < 1:18170376‑M1/68‑1 (MQ=255) | TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |