| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 816 (1.170) | 34 (0.060) | 11/98 | NT | 5.3% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 496 (0.810) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 1103 total aligned reads displayed.
ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 | tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:1039906‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:48875385‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat > 1:57527400‑M1/67‑67 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:46461010‑M1/1‑1 (MQ=255)ataatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:49625293/1‑67 (MQ=255)ataatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:33227675/1‑67 (MQ=255)ataatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:35505733/1‑67 (MQ=255)ataatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:51207691/1‑67 (MQ=255) gcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:41889135‑M1/1‑1 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:55951392/1‑65 (MQ=255) aatCCGCGATCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTGTCGCCGCCGCTCAGtt > 1:17319737/1‑65 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:36121241‑M1/64‑68 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:18153323/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:21578805/68‑1 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:4690804/1‑67 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc > 1:47879696‑M1/62‑67 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc < 1:34707264‑M1/6‑1 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc > 1:3495959‑M1/62‑67 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc < 1:38045487‑M1/6‑1 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGcc > 1:20810210‑M1/62‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:58055153/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:53665638/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGATGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:38584491/1‑68 (MQ=255) gcgTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAg > 1:50124703/1‑68 (MQ=255) gTTCCTTCGCGAATAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAgg < 1:6856318/67‑1 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAgg < 1:50499806/67‑1 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAgg < 1:32081638/67‑1 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgc < 1:25260706/67‑1 (MQ=255) ccTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag < 1:44502690/68‑1 (MQ=255) cTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagc < 1:5332048/68‑1 (MQ=255) ttCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagca < 1:12697289/68‑1 (MQ=255) ccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCATGgcagca < 1:54127248‑M1/16‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:22902064/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:32624914/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:56414602/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAcc < 1:42377712/67‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:34165998/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:33888399/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:30608868/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:7899116/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:16487290/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:14743243/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:16028460/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:27376843/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:2683767/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:21081659/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:22374205/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:21998471/68‑1 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATAc > 1:42977960‑M1/47‑65 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATAc > 1:15099586‑M1/47‑65 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCt > 1:17695899‑M1/47‑67 (MQ=255) aaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCttt > 1:43950376/1‑68 (MQ=255) aaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCtt < 1:20511725/67‑1 (MQ=255) aaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCtt < 1:6407271/67‑1 (MQ=255) gTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAac < 1:45697803/66‑1 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:49273862/68‑1 (MQ=255) cgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGc > 1:18622486‑M1/38‑68 (MQ=255) gcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCg > 1:1191308‑M1/37‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt > 1:54994690/1‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:3012319/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:20049750/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:43499074/68‑1 (MQ=255) ggATCTCAACGGCCTTTTCGCCGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:45308485/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:37421249/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:9127698/1‑68 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGtt < 1:48433787/68‑1 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGt > 1:1116399/1‑67 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:28415639/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:25841410/68‑1 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:13301970/1‑68 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:41363883/1‑68 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:8631372/1‑68 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:14258466/1‑67 (MQ=255) gCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:10075828/1‑68 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:23603583/68‑1 (MQ=255) ttttCGTCGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACTCTGCGTTCCAGTTCTTGCGCACt < 1:35866044/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:4084960/68‑1 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:19059251/68‑1 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:19526739/68‑1 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:39060327/68‑1 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:33508694/68‑1 (MQ=255) ttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:9592748/68‑1 (MQ=255) ttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:1374088/68‑1 (MQ=255) ttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:2878511/68‑1 (MQ=255) ttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:29200904/68‑1 (MQ=255) ttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:52218260/68‑1 (MQ=255) aCGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCCGATCTTGCGCACTGCGTAc > 1:29696653/1‑68 (MQ=255) aCGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:5702737/1‑66 (MQ=255) cgccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:51576598/68‑1 (MQ=255) cgccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:48228859/68‑1 (MQ=255) gccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:31515404/1‑67 (MQ=255) tCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:27702809/67‑1 (MQ=255) tCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:40224478/67‑1 (MQ=255) gtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:54579099‑M1/62‑1 (MQ=255) gTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGGTg > 1:31029929/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:52705584‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:36843283‑M1/68‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc > 1:24186551‑M1/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc > 1:7534121‑M1/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:39600338‑M1/68‑1 (MQ=255) | ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |