| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3385586 | 367 (0.520) | 18 (0.030) | 10/98 | NT | 5.3% | noncoding (152/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385603 | NA (NA) | noncoding (169/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
Only 100 of 614 total aligned reads displayed.
CAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGG > CP009273/3385519‑3385653 | cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT > 1:50144167‑M1/1‑68 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT < 1:40411302‑M1/67‑1 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT < 1:44878574‑M1/67‑1 (MQ=255) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:32636203/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:8000924/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:29096797/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:33949536/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:51795172/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 1:8565821/1‑67 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:16805346/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:37742164/1‑68 (MQ=35) cTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc < 1:46081761/67‑1 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:52487927/68‑1 (MQ=35) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:18907768/68‑1 (MQ=35) tCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac > 1:57391517/1‑68 (MQ=31) tCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATgcgtcgctgtgcgtcttatcaggggtacaatc > 1:36919189‑M1/1‑36 (MQ=255) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:27537558/1‑67 (MQ=33) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:53546818/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:31577259/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:32081440/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:6317452/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:34296953/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:36153954/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:36495746/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:43835964/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:44221166/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:12807821/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:45414232/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:56868375/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:14197970/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:396213/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:39284957/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:40728656/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:35034508/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:49112162/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:33619800/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:7633041/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:10287037/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:54579594/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:18497192/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:23449455/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:10109632/68‑1 (MQ=35) tCCGTTTGTAGACCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:47930978/1‑67 (MQ=25) tCCGTTTGTACGCCTGATAAGACGCACAGCGTCGCCTCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:42035309/1‑67 (MQ=255) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGc < 1:28235373/68‑1 (MQ=35) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGc < 1:6478772/68‑1 (MQ=35) cGTTTGTAGGCCTGATAATACGCACAGCGTCGAATCAGGCAACGGCTGCCGGATGCGGCGTAAACGcc < 1:38636519/68‑1 (MQ=255) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTa > 1:22021142/1‑68 (MQ=35) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTa < 1:24203549/68‑1 (MQ=35) gTAGGCCGGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATc < 1:53185176/68‑1 (MQ=25) tAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATcc > 1:38529030/1‑68 (MQ=35) tAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATcc > 1:43061200/1‑68 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:29774259/1‑67 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:1811992/1‑67 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:13079132/1‑67 (MQ=35) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:47617321/1‑67 (MQ=35) ccTGATgcgacgctgtgcgtcttatcaggcctacaatcggaagataaccgtaggtcggataaggcgtt > 1:55021990‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:23887828‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:51058746‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:30099530‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:49813249‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:55660276‑M1/1‑6 (MQ=255) ccTGATgcgacgcagtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:21405564‑M1/1‑6 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:26669362/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:45184881/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:15651696/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:43439164/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:57840409/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:23681158/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:38316338/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:26115996/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:6041291/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:11813328/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:1083916/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:31351991/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:9350883/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:46808968/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:25692629/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:24827021/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:39955337/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:20877382/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:19939518/67‑1 (MQ=35) ccTGAAgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgt < 1:17484505‑M1/67‑62 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:33007743‑M1/1‑5 (MQ=255) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:42386277‑M1/1‑5 (MQ=255) cTGATgcgacgcggtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:44601939‑M1/1‑5 (MQ=255) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:5608798/68‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:41567053/68‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:50834009/68‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:2636496/68‑1 (MQ=35) gATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttac > 1:19708885‑M1/1‑3 (MQ=255) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 1:48549701/68‑1 (MQ=35) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg < 1:14943683‑M1/67‑67 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:37398089‑M1/1‑1 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:35561384‑M1/1‑1 (MQ=255) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:14543066/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:13335914/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:12295691/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:1613927/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:11216614/67‑1 (MQ=35) | CAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGG > CP009273/3385519‑3385653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |