New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3509341 =1016 (1.450)58 (0.100) 9/94 NT 7.5% intergenic (‑69/+38) dam/damX DNA adenine methyltransferase/cell division protein that binds to the septal ring
?CP009273 3509369 = 573 (0.980)intergenic (‑97/+10) dam/damX DNA adenine methyltransferase/cell division protein that binds to the septal ring

Only 100 of 1242 total aligned reads displayed.

TGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCA  >  CP009273/3509275‑3509407
                                                                  |                                                                  
tGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACt                                                                   <  1:45223266/68‑1 (MQ=255)
tGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACt                                                                   <  1:48079042/68‑1 (MQ=255)
tGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACt                                                                   <  1:25797157/68‑1 (MQ=255)
tGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACt                                                                   <  1:31273940/68‑1 (MQ=255)
tGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACt                                                                   <  1:26941867/68‑1 (MQ=255)
  gccaaaaacccgtgggcgaaaccgctgcgtcaggtacaggccgatctgaagtaatcaaggttatctc                                                                  <  1:24825703‑M1/3‑1 (MQ=255)
  gccaaaaacccgtgggcgaaaccgctgcgtcaggtacaggccgatctgaagtaatcaaggttatctc                                                                  <  1:49224661‑M1/3‑1 (MQ=255)
   ctaactaaTTACACATTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTccc                                                                >  1:27368842/1‑68 (MQ=255)
   ccaaaaacccgtgggcgaaaccgctgcgtcaggtacaggccgatctgaagtaatcaaggttatCTccc                                                                <  1:41421854‑M1/5‑1 (MQ=255)
   ccaaaaacccgtgggcgaaaccgctgcgtcaggtacaggccgatctgaagtaatcaaggttatCTccc                                                                <  1:13530602‑M1/5‑1 (MQ=255)
   ccaaaaacccgtgggcgaaaccgctgcgtcaggtacaggccgatctgaagtaatcaaggttatCTccc                                                                <  1:8122270‑M1/5‑1 (MQ=255)
    taactaaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCg                                                               <  1:49650450/68‑1 (MQ=255)
    taactaaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCg                                                               <  1:56701364/68‑1 (MQ=255)
    caaaaacccgtgtgcgaaaccgctgcgtaaggtacaggccgatctgaagtaatcaaggttatCTccc                                                                >  1:16332848‑M1/63‑67 (MQ=255)
      actaaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCa                                                             >  1:43988819/1‑68 (MQ=255)
        taaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAAc                                                           >  1:48386579/1‑68 (MQ=255)
        taaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAAc                                                           <  1:24177533/68‑1 (MQ=255)
        taaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAAc                                                           <  1:53392690/68‑1 (MQ=255)
        taaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAAc                                                           >  1:20027634/1‑68 (MQ=255)
        taaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAAc                                                           >  1:15152918/1‑68 (MQ=255)
        taaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAAc                                                           >  1:56293438/1‑68 (MQ=255)
         aaTTACACCTTCTGCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACg                                                          <  1:54910545/68‑1 (MQ=255)
         aaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCGTCCAGCGCTTCAGGCAACTCCCGCAACg                                                          <  1:2814832/68‑1 (MQ=255)
         aaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACg                                                          <  1:10753533/68‑1 (MQ=255)
         aaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACg                                                          <  1:44499353/68‑1 (MQ=255)
         aaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACg                                                          <  1:18258163/68‑1 (MQ=255)
         aaTTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACg                                                          <  1:50649220/68‑1 (MQ=255)
             acacCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGCTaa                                                      >  1:36052309/1‑68 (MQ=255)
              cacCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATaa                                                      >  1:29264391/1‑67 (MQ=255)
              cacCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATaa                                                      >  1:27767226/1‑67 (MQ=255)
               acCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTAAGGCAACTCCCGCAACGATaaa                                                     >  1:22482364/1‑67 (MQ=255)
                ccTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAAcc                                                   >  1:36703117/1‑68 (MQ=255)
                ccTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAAcc                                                   <  1:26362190/68‑1 (MQ=255)
                ccTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAAcc                                                   >  1:14113010/1‑68 (MQ=255)
                 cTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCa                                                  >  1:6105284/1‑68 (MQ=255)
                 cTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCa                                                  <  1:41772072/68‑1 (MQ=255)
                 cTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCa                                                  >  1:14508110/1‑68 (MQ=255)
                     tcCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGc                                              <  1:12819220/68‑1 (MQ=255)
                     tcCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGc                                              >  1:667694/1‑68 (MQ=255)
                       cGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCACCGATAAACCATTGCgg                                            >  1:42162826/1‑68 (MQ=255)
                        ggCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCggg                                           <  1:40463412/68‑1 (MQ=255)
                        ggCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCggg                                           <  1:7466631/68‑1 (MQ=255)
                         gCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGga                                          >  1:39950037/1‑68 (MQ=255)
                         gCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGga                                          >  1:30198263/1‑68 (MQ=255)
                         gCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGga                                          >  1:50192115/1‑68 (MQ=255)
                         gCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGga                                          >  1:19283478/1‑68 (MQ=255)
                          cTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGgag                                         >  1:54446259/1‑68 (MQ=255)
                           tgtgGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAACCCATTGCGGgaga                                        >  1:1700925/1‑68 (MQ=255)
                           tgtgGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGgag                                         <  1:34404762/67‑1 (MQ=255)
                                agaAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAAc                                    <  1:51923847/67‑1 (MQ=255)
                                  aaaGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCtt                                 >  1:3311461/1‑68 (MQ=255)
                                   aaGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCt                                  <  1:53889594/66‑1 (MQ=255)
                                    aGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGa                               <  1:48658723/68‑1 (MQ=255)
                                     gCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGAt                              >  1:36386201/1‑68 (MQ=255)
                                        ccGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTAc                           <  1:52354830/68‑1 (MQ=255)
                                        ccGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTAc                           <  1:3700805/68‑1 (MQ=255)
                                         gccgatctgaagtaatcaaggttatCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACt                          <  1:3576672‑M1/43‑1 (MQ=255)
                                         cGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACt                          <  1:11874991/68‑1 (MQ=255)
                                         cGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACt                          <  1:18842614/68‑1 (MQ=255)
                                           aCAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTc                        >  1:31562485/1‑68 (MQ=255)
                                            cAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCa                       >  1:39331375/1‑68 (MQ=255)
                                               ctgaagtaatcaaggttatCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGa                     <  1:19766302‑M1/48‑1 (MQ=255)
                                                aTCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCa                       <  1:47030215/64‑1 (MQ=255)
                                                aTCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGAt                    <  1:4618456/67‑1 (MQ=255)
                                                 tCCAGCGCTTCAGGCAACTCCCGCAACGATAATCCATTGCGGGAGATAACCTTGATTACTTCAGATCg                  >  1:25299484/1‑68 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATATCCTTGATTACTTCAGATCgg                 <  1:37952602/68‑1 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:33457445/68‑1 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:22101474/68‑1 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:35461714/68‑1 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:46542027/68‑1 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:10126898/68‑1 (MQ=255)
                                                  ccAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:30411552/68‑1 (MQ=255)
                                                  ccAGCGATTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:15727218/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATATACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:51326411/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:57994835/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:12277816/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:11534499/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:9458960/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:29824425/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:43332062/68‑1 (MQ=255)
                                                   cAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGc                <  1:35004369/68‑1 (MQ=255)
                                                   agtaatcaaggttatCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCgg                 <  1:28717506‑M1/52‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:23116589/68‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:21503428/68‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:3760551/68‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:55444498/68‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:40749000/68‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:34039226/68‑1 (MQ=255)
                                                       gcTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:1743404/68‑1 (MQ=255)
                                                        tcaaggttatCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:4755394‑M1/57‑1 (MQ=255)
                                                        tcaaggttatCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGt            <  1:45732333‑M1/57‑1 (MQ=255)
                                                         tgcAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTAc          <  1:20507278/66‑1 (MQ=255)
                                                               cAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGAc     >  1:23595831/1‑67 (MQ=255)
                                                               cAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGAc     >  1:38682895/1‑67 (MQ=255)
                                                               cAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGAc     >  1:32341228/1‑67 (MQ=255)
                                                                 aCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCa  <  1:57278479/68‑1 (MQ=255)
                                                                 aCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCa  >  1:55885411/1‑68 (MQ=255)
                                                                 aCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCa  <  1:44831885/68‑1 (MQ=255)
                                                                 aCTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCa  <  1:8877403/68‑1 (MQ=255)
                                                                  CTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCa  <  1:42847680‑M1/67‑1 (MQ=255)
                                                                  |                                                                  
TGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAACTCCCGCAACGATAAACCATTGCGGGAGATAACCTTGATTACTTCAGATCGGCCTGTACCTGACGCA  >  CP009273/3509275‑3509407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.