New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3935250	NA (NA)	146 (0.240) +AAGCTGT	6/98	NT	NA	noncoding (83/1542 nt)	rrsC	16S ribosomal RNA of rrnC operon
	?	CP009273	= 4028968	NA (NA)					noncoding (78/1542 nt)	rrsA	16S ribosomal RNA of rrnA operon

CCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGA  >  CP009273/3935214‑3935306                                     |                                                         ccaaaCAAATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACggg                            <  1:11581279/64‑1 (MQ=0)          tgaaaGTCGAACGGTAACAGGAAAAAGCTTGCTGTTTGTCTGACGAGTTGCGGAGTGGTGAGTAATGt                  <  1:55904390/65‑1 (MQ=1)                      ggaaaCAGGAAACAGCTTGCGGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGc      <  1:18509067/65‑1 (MQ=0)                          actggAACCAGGTTGGTGTTTGGCTGAGGAGTGGGGGTCGGGTGTGTTATGTCTGGGAAACTGCCTGa  <  1:17785161/65‑1 (MQ=0)                                     |                                                         CCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGA  >  CP009273/3935214‑3935306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.