New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497475 (0.680)54 (0.090) 15/94 NT 11.2% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 457 (0.780)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 702 total aligned reads displayed.

TTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047451‑4047584
                                                                  |                                                                   
   cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  <  1:53876642‑M2/67‑4 (MQ=255)
    gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                >  1:7196958‑M2/1‑63 (MQ=255)
    gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                >  1:53005539‑M2/1‑63 (MQ=255)
    gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                >  1:45850696‑M2/1‑63 (MQ=255)
    gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:43424981‑M2/68‑6 (MQ=255)
    gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:31898850‑M2/68‑6 (MQ=255)
      aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               <  1:839613‑M2/67‑7 (MQ=255)
      aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               <  1:47551750‑M2/67‑7 (MQ=255)
      aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               <  1:36517584‑M2/67‑7 (MQ=255)
      aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               >  1:28840720‑M2/1‑61 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:963091‑M2/67‑10 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:55715365‑M2/67‑10 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:31361541/68‑1 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:41628621/68‑1 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:47993509/68‑1 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:57692498/68‑1 (MQ=255)
         aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:30466540/68‑1 (MQ=255)
          ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                                          <  1:14221782/68‑1 (MQ=255)
          ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                                          <  1:7937702/68‑1 (MQ=255)
           tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:54344637/1‑68 (MQ=255)
           tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:36021430/68‑1 (MQ=255)
            ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        <  1:55119581/68‑1 (MQ=255)
            ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        >  1:21510433/1‑68 (MQ=255)
              ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:37598113‑M2/1‑53 (MQ=255)
              ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCAt                                                       >  1:23574205/1‑67 (MQ=255)
              ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:44808650/1‑68 (MQ=255)
              ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:22121015/1‑68 (MQ=255)
              ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:6597723/1‑68 (MQ=255)
              ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:19104437/1‑68 (MQ=255)
               cGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     <  1:15916924/68‑1 (MQ=255)
                gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:15298049/1‑67 (MQ=255)
                 cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   >  1:44150885/1‑68 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttga                                                  >  1:11659442‑M2/1‑49 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:33014215/67‑1 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:34198531/67‑1 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:12659019/67‑1 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:13810963/67‑1 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:6123605/67‑1 (MQ=255)
                  aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTCAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:10990830/67‑1 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaa                                                 >  1:9195686‑M2/1‑48 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:32377779/1‑68 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 <  1:1035004/68‑1 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 <  1:22358986/68‑1 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:38398854/1‑68 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:37901601/1‑68 (MQ=255)
                   aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:5340042/1‑68 (MQ=255)
                          aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa                                           >  1:43816358/1‑67 (MQ=255)
                          aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa                                           >  1:13464649/1‑67 (MQ=255)
                          aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa                                           >  1:45348432/1‑67 (MQ=255)
                          aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCCGCGGCCATCACCGTTAGCCa                                           >  1:45532319/1‑67 (MQ=255)
                           ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt                                         >  1:14718370‑M2/1‑40 (MQ=255)
                           ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                                         >  1:24457309/1‑68 (MQ=255)
                            tCAAACAGTTCGCCGGGCAAAACCTGAATCAACACTACCTGCCCGGCGGCCATCACCGTTAGCCAGCg                                        >  1:57449131/1‑68 (MQ=255)
                              aaaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccgggcgaactgtttgaatcaacggttgc                                      >  1:26492324‑M2/1‑37 (MQ=255)
                              aaaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGc                                      <  1:29820213/68‑1 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg                                    >  1:54760285‑M2/1‑35 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:11861161/1‑68 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:38870731/1‑68 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:57026373/1‑68 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:16706423/1‑68 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:27378126/1‑68 (MQ=255)
                                aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:876289/1‑68 (MQ=255)
                                aCAGTTCGCCGCGCAAATCCTGAATCAACACTTCCcgcccggcgaactggttgaatcaacggttgcgg                                    >  1:55889212‑M2/1‑35 (MQ=255)
                                 cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:26950060/1‑68 (MQ=255)
                                 cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:27740092/1‑68 (MQ=255)
                                  aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  >  1:40011600/1‑68 (MQ=255)
                                     tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:3267169/67‑1 (MQ=255)
                                     ccGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAGGTGtt                               >  1:1005741/2‑68 (MQ=255)
                                        ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                             >  1:46228260/1‑67 (MQ=255)
                                        ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                             >  1:17038208/1‑67 (MQ=255)
                                            gCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCa                          >  1:46771988/1‑66 (MQ=255)
                                            gCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCa                          >  1:18718270/1‑66 (MQ=255)
                                               aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:178528/68‑1 (MQ=255)
                                                  ccTGAATCAACACTTCCTGCCCGGCGGCCATCGCCGTTAGCCAGCGGCTGGGGTTTTCCAGCTGgcg                   >  1:2311382/1‑67 (MQ=255)
                                                  ccTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCCGCTGgcgc                  >  1:50612246/1‑68 (MQ=255)
                                                  ccTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgcgc                  >  1:39226433/1‑68 (MQ=255)
                                                       ctCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:24028386/67‑1 (MQ=255)
                                                       aTCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:49444239/1‑68 (MQ=255)
                                                       aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:40541100/68‑1 (MQ=255)
                                                       aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:20231612/1‑68 (MQ=255)
                                                       aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:632028/68‑1 (MQ=255)
                                                       aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:15525708/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTCGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:34854892/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:49804469/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:24923857/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:56249358/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:35739716/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:51687956/68‑1 (MQ=255)
                                                        tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:17529255/68‑1 (MQ=255)
                                                         cAACACTTCCAGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGc           <  1:31076417/68‑1 (MQ=255)
                                                             acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:20855435/1‑67 (MQ=255)
                                                             acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:28396025/1‑67 (MQ=255)
                                                              cTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       >  1:25554242/1‑67 (MQ=255)
                                                                tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:3527951/1‑67 (MQ=255)
                                                                tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:52220217/1‑67 (MQ=255)
                                                                tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:4207514/1‑67 (MQ=255)
                                                                  cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:36971489/68‑1 (MQ=255)
                                                                  cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:19697250/68‑1 (MQ=255)
                                                                  cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:51156482/68‑1 (MQ=255)
                                                                  cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:50288704/68‑1 (MQ=255)
                                                                  |                                                                   
TTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047451‑4047584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.