| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 732 (1.050) | 76 (0.140) | 17/90 | NT | 11.9% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 539 (0.960) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 1037 total aligned reads displayed.
CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 | gCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaa > 1:44367621/1‑68 (MQ=255) ccTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 1:35849554/1‑68 (MQ=255) ccTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGGCTGGTCTACATTTGGGGGGCGaaaaaa > 1:5393755/1‑68 (MQ=255) tgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaaa < 1:19382851‑M1/41‑1 (MQ=255) atacacgcaccgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGt < 1:28998944‑M2/6‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTg < 1:39166545‑M1/44‑1 (MQ=255) tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTgt < 1:6996101/68‑2 (MQ=255) tacacgcaccgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTgg < 1:31483289‑M2/8‑1 (MQ=255) acacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTGGACCTTTGGGGGGCGAAAATAAGTg < 1:42757044‑M1/44‑1 (MQ=255) acacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTg < 1:43262248‑M1/44‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:13717072/68‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:1164513/68‑1 (MQ=255) cgcaccgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTAt < 1:41901919‑M2/12‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGTGCGAAAAAAAGTGGCTAt < 1:4356742/67‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:33244265/1‑68 (MQ=255) gTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCg < 1:34900610/68‑1 (MQ=255) gTACCTGGAGGCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCg < 1:46966199/68‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg < 1:56893025‑M1/52‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:48639808/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:877036/68‑1 (MQ=255) cgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg < 1:36847875‑M1/54‑1 (MQ=255) ccTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg < 1:3620147/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:45429506/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc < 1:38209999/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:47836316/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:21217173/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:14775635/1‑68 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:10800796/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:37699680/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:41344373/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:2832369/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:27645354/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:48300716/68‑1 (MQ=255) tagccactttttttcgccccccaactgtagaccagccggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:2556655‑M2/19‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCgt < 1:57401135‑M2/20‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:17749843/68‑1 (MQ=255) gAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg > 1:1003519/1‑68 (MQ=255) agccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 1:38722337‑M1/58‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTGTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:30030930/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:19697344/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:30466749/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:1596509/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:1873493/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:26756375/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:1539210/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:12703284/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:11169415/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa > 1:9396424/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa > 1:28655365/1‑68 (MQ=255) gTCATCCCTTTCGCCCCCCGTCTTGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:12191529/67‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGTCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:50836806/68‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:23299851‑M2/24‑1 (MQ=255) cactttttttcgccccccaaatgaagcccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:6441136‑M2/24‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:6116985/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:31944438/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:24084345/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:5574693/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:3973612/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:55239790/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:33942205/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:18221711/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:20216173/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGGCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:49013321/67‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa > 1:22583750/1‑68 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:32473528/1‑68 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:44095602/1‑68 (MQ=255) ccTTTCGCCCCCCGTCTGCTCTACATTTGGGGGTCGAAAAAAAGTGGCTATCGGTGAGTGTATGCAgg < 1:5833013/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:54586823‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:21927047‑M1/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:34503378‑M1/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:29347889‑M1/1‑68 (MQ=255) TCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGagag > 1:400775‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:14132103‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:49766023‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:16203940‑M1/1‑68 (MQ=255) CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt < 1:45125432‑M1/68‑1 (MQ=255) CCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGGGAGTGCTa > 1:24968019‑M1/1‑68 (MQ=255) tCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg > 1:40759201/1‑68 (MQ=255) ggTCTACATTTGGGGGGCGAAAAAAAGTGGCTATAGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCa > 1:27242671/1‑68 (MQ=255) tCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAtt > 1:36619384/1‑68 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:52905994/1‑67 (MQ=255) aTTTGGGGGGCG‑AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:51303022/1‑68 (MQ=255) tttGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:49402959/1‑68 (MQ=255) tttGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:20594208/1‑68 (MQ=255) ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCa < 1:42258512‑M2/57‑1 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:770906‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:46051478‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGGGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:56410215‑M2/11‑66 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:26027301‑M2/10‑67 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc < 1:13199860‑M2/58‑1 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:46557792‑M2/10‑67 (MQ=255) gggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt < 1:5219716‑M2/59‑1 (MQ=255) gggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt < 1:31070319‑M2/59‑1 (MQ=255) gggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt < 1:8086239‑M2/59‑1 (MQ=255) ggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCg > 1:35338639‑M2/8‑68 (MQ=255) ggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCg > 1:47460088‑M2/8‑68 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:5356115‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:16777539‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:24568903‑M2/63‑1 (MQ=255) aAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCtt > 1:37165679‑M2/2‑68 (MQ=255) | CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |