New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 725679NA (NA)8 (0.010) 4/100 NT NA coding (641/4194 nt) rhsC Rhs family putative polymorphic toxin
?CP009273 = 725702 NA (NA)coding (664/4194 nt) rhsC Rhs family putative polymorphic toxin

Only 100 of 107 total aligned reads displayed.

ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTC  >  CP009273/725695‑725768
       |                                                                  
acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:51656491/1‑68 (MQ=31)
acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:14618906/1‑68 (MQ=31)
acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:25534793/1‑68 (MQ=31)
acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:42779598/1‑68 (MQ=31)
acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:20687497/1‑68 (MQ=31)
acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:49421121/1‑68 (MQ=31)
  aGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:54409534/1‑67 (MQ=33)
  aGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:28598758/1‑67 (MQ=33)
   gACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGc     >  1:56926003/1‑68 (MQ=35)
   gACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGc     >  1:52663312/1‑68 (MQ=35)
    ccGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:38786344/2‑68 (MQ=25)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:28860322/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:28819576/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:28127066/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:48832084/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:32029019/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:32281235/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:45095783/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:51969534/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:33221315/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:44884906/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:44686867/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:33540456/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:33999948/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:35316566/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:36220749/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:36996130/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:39134830/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:39719351/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:42259588/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:14095350/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:11050176/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:11865665/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:9747655/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:856160/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:13443434/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:13487095/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:8361527/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:13853845/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:14002244/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:27378930/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6390106/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:56747863/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:19445260/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:5261464/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:24698928/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:25981695/1‑68 (MQ=35)
    aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGGGACGGATGGTGCCGGGCg    >  1:44263793/1‑68 (MQ=25)
    aCGTTACACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:12560937/1‑68 (MQ=25)
     cGTTCCACCGCGAAGCCGCCGGTGGATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:29080840/1‑67 (MQ=25)
     cGTTCCACCGCGAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGTGACGGATGGTGCCgg       <  1:52462415/64‑1 (MQ=11)
     cGTTCCACCGCGAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGTGACGGATGGTGCCGGGCg    <  1:27739807/67‑1 (MQ=11)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCggg      <  1:24222081/65‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCggg      <  1:39320827/65‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCggg      <  1:58043221/65‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       <  1:4252898/64‑1 (MQ=33)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       <  1:978514/64‑1 (MQ=33)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       <  1:978468/64‑1 (MQ=33)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       <  1:6762369/64‑1 (MQ=33)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:13509448/67‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:19120607/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:53163170/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:41187340/67‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6723353/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:27342199/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:704674/67‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:29978636/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:47473711/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:11773290/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:10670909/67‑1 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:35838539/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:44555432/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:8928451/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:11971595/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:44986951/1‑67 (MQ=35)
     cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:32047132/1‑67 (MQ=35)
      gTTCCACCGCGAAGCCGCCTGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:15113408/1‑68 (MQ=25)
      gTTCCACCGCGAAGCCGCCGGTGATTTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:50778028/1‑68 (MQ=25)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCCCCGGCGTGACGGATGGTGCCGGGCgg   >  1:27919879/1‑66 (MQ=255)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCggc  >  1:16926141/1‑66 (MQ=25)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:35361720/1‑66 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGt   >  1:16218865/1‑67 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGt   >  1:5372659/1‑67 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:21418864/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:12852679/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:6522446/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:18515601/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:19638138/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:53364844/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:52916030/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:20000606/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:21589309/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:51804864/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:51804818/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:50916324/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:28860799/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:47255828/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:333343/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:33513441/1‑68 (MQ=35)
      gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:37632134/1‑68 (MQ=35)
       |                                                                  
ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTC  >  CP009273/725695‑725768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.