New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1092806 =NA (NA)10 (0.020) 7/106 NT NA intergenic (+521/+215) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 1093009 = NA (NA)intergenic (+724/+12) ycdU/serX putative inner membrane protein/tRNA‑Ser

Only 100 of 308 total aligned reads displayed.

ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCG  >  CP009273/1092973‑1093060
                                    |                                                   
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:53988130/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:32078696/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:5154994/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:53202386/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:15503826/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:30800058/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:13337136/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:22913833/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGGACGCGCTCTTCTTTAAATTTTTCGGTGAGGGGGGGATTc                      >  1:41323602/1‑68 (MQ=11)
  ataCGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCATTTAAGATGGCGGGGAGGGGGGGATTCg                     >  1:33236436/1‑67 (MQ=11)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGactg                      >  1:19721583/1‑63 (MQ=1)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGTTTCGa                    >  1:3151253/1‑68 (MQ=25)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTccc                    >  1:40378957/1‑66 (MQ=14)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTcca                    >  1:931146/1‑66 (MQ=14)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTcca                    >  1:19176986/1‑66 (MQ=14)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                      >  1:3771065/1‑66 (MQ=31)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                    >  1:39715351/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                    >  1:52530148/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                    >  1:50185442/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                    >  1:7658828/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                    >  1:27953062/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                    >  1:27851773/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCGTTATATATGGCGGTGAGGGGGGGATTCgc                    >  1:12191668/1‑67 (MQ=11)
    aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTccct                   >  1:27715198/1‑64 (MQ=14)
    aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCgca                   >  1:9453958/1‑65 (MQ=18)
    aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                   >  1:9158489/1‑67 (MQ=37)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGCAc                  >  1:33683016/1‑67 (MQ=18)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:38775760/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:45162909/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:52948420/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:54273715/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:3588579/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:21920724/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                 <  1:13949104/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAAcc                 <  1:23536624/68‑1 (MQ=255)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                <  1:42462260/68‑1 (MQ=40)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                <  1:12637904/68‑1 (MQ=40)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                <  1:4021395/68‑1 (MQ=40)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAAGGCGGTGAGGGGGGGATTCGAAccc                <  1:25339609/68‑1 (MQ=255)
      caaaaaacaGCCCTTACTTTCGTACGAGCTCTTCTTTAAATAGGGCGGTGAGGGGGGGATTCGAAccc                <  1:48458431/67‑1 (MQ=14)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                >  1:17647090/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                >  1:22248815/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                >  1:23883502/1‑67 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGGATccccc              >  1:7009527/1‑68 (MQ=255)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc              <  1:36417394/68‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc              <  1:42204588/68‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc              <  1:55167236/68‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc              <  1:55263677/68‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc              <  1:2633413/68‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc               <  1:49817406/67‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc               <  1:8676297/67‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc               <  1:29672079/67‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc               <  1:15159227/67‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAAcccc               <  1:28628856/67‑1 (MQ=255)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt           <  1:28269723/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt           <  1:900219/68‑1 (MQ=40)
            aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATa          <  1:58034343/68‑1 (MQ=40)
             acgCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATAc         <  1:34938640/66‑1 (MQ=255)
             aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc         <  1:46274873/68‑1 (MQ=40)
              aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg        <  1:32655605/68‑1 (MQ=40)
              aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg        >  1:20029076/1‑68 (MQ=40)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGACCCCCCGATACGtt      >  1:42565327/1‑68 (MQ=255)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt      >  1:46966295/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt      >  1:48558666/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt      >  1:11560353/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt      >  1:21382054/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt      >  1:18252813/1‑68 (MQ=39)
                 ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt       <  1:2997887/66‑1 (MQ=37)
                 ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt       <  1:32374066/66‑1 (MQ=37)
                 ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt       <  1:6080181/66‑1 (MQ=37)
                  gctACGTTCCTACGAGCCCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:26693079/66‑1 (MQ=11)
                  cctACTTGCCTACGAGCCCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:17219261/66‑1 (MQ=11)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:54942741/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:26959187/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:30299891/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:26616973/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:31082231/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:24464801/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:8183199/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:14828759/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:34100943/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:35442051/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:10210413/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:5758679/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:57232198/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:36621781/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:22114518/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:47905602/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:54458115/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:15965513/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:53333718/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:41999089/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:43510708/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:52000283/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:44937962/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:4591866/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:48965660/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:48733953/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGAATTCGAACCCCCGATACGTTGc    <  1:20135558/68‑1 (MQ=25)
                  cGTACTTTCGTACGAGCGCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc    <  1:21656654/68‑1 (MQ=255)
                                    |                                                   
ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCG  >  CP009273/1092973‑1093060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.