| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 695 (0.990) | 50 (0.090) | 17/92 | NT | 8.7% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 484 (0.840) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 1034 total aligned reads displayed.
GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 | atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:14256412‑M2/2‑1 (MQ=255) ttcttTACCTGGCTTACTGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:18480044/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:28951770/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:35192421/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:19412534/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:18204206/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:26706344/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:7896541/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:56070854/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:55083532/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:30304567/67‑1 (MQ=255) ttcttTACCGGGATTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:12661650/67‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:27344043/1‑67 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:25261463/68‑1 (MQ=255) gcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAAc < 1:30988640‑M2/5‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:16825241/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:43203416/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:20269718/68‑1 (MQ=255) agtaagtttgacggcgcagtaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACAt < 1:6372618‑M2/7‑1 (MQ=255) aCCGGTCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATAc < 1:7239879/68‑1 (MQ=255) aCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:56946281/1‑66 (MQ=255) ccGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt < 1:45694901/68‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:47250860/1‑67 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:25962187/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:31370044/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:57827492/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:23476919/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:29788571/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:36667015/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:21062149/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:42141209/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:53365469/68‑1 (MQ=255) gggCGTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:40193190/68‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:18980173/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:44737863/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:13816993/1‑68 (MQ=255) ttACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:38884920/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:8381146/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:35381168‑M1/68‑1 (MQ=255) CGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt > 1:9070508‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGGGTGGTGGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:48340575‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:34386391‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:46717574‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:42618208‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:43049693‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:23955160‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:21990890‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:56662525‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:37947383‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:20791901‑M1/1‑68 (MQ=255) CGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGc > 1:5749561‑M1/1‑67 (MQ=255) CGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCg < 1:3401803‑M1/68‑1 (MQ=255) ATTTCGAAAATCGAGGTTGCTGCGTATTCAATTAATGCTCCGTGAAACATACTGCTCATAATGCGGGa > 1:45199605‑M1/1‑68 (MQ=255) TTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAgg > 1:41123156‑M1/1‑68 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTTATAATGCGGGAGgt < 1:33515344/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:17709944/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:37305888/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:41511132/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt > 1:13315085/1‑68 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:38242654/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:22437581/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:32690597/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:25588299/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:54658742/68‑1 (MQ=255) aattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGgt < 1:47666797‑M2/28‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACAGCTCATAATGCGGGAGgtg < 1:32042272/68‑1 (MQ=255) ttgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGgtgt < 1:5200981‑M2/30‑1 (MQ=255) ttgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGgtgt < 1:17273782‑M2/30‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:54036332/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:55667712/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:39596971/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:21742643/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:36332531/68‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:15355285/66‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:50980496/66‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:24385929/66‑1 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACga > 1:1165019/1‑68 (MQ=255) gcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag < 1:51667949/68‑1 (MQ=255) gcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag < 1:29331033/68‑1 (MQ=255) cGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag > 1:19794701/1‑67 (MQ=255) aTTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc > 1:11900735/1‑66 (MQ=255) aTTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc > 1:22779466/1‑66 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGTAGGTGTTGTGATCAAGCACGAGACGCTgg < 1:12297143/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTgg < 1:5955063/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:10847098/1‑67 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:46337387/1‑67 (MQ=255) aaTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGc < 1:40574058/68‑1 (MQ=255) aaTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGc < 1:16189587/68‑1 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGc > 1:52738725/1‑67 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:32992142/1‑68 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:50507651‑M2/59‑1 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:35793965‑M2/59‑1 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:49248948‑M2/9‑68 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:49864200‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:2477791‑M2/61‑1 (MQ=255) cgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGa > 1:1001750‑M2/7‑68 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:14768661‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:11332309‑M2/65‑1 (MQ=255) cggcAAACATAATGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:27992776/65‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:9447021/68‑1 (MQ=255) | GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |