New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1871532536 (0.770)26 (0.040) 10/96 NT 5.6% intergenic (+19/+3) yeaO/yoaF DUF488 family protein/DUF333 family outer membrane lipoprotein
?CP009273 = 1871547 423 (0.710)coding (243/255 nt) yoaF DUF333 family outer membrane lipoprotein

Only 100 of 605 total aligned reads displayed.

GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612
                                                                   |                                                                 
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:10754713/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:49169138/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:16436416/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:17581356/1‑68 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:51580600‑M2/1‑66 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:48354206‑M2/1‑66 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                >  1:43690281‑M2/1‑65 (MQ=255)
     tGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgg                                                              <  1:7868008‑M2/68‑6 (MQ=255)
     tGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgg                                                              <  1:36709678‑M2/68‑6 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             <  1:57437210‑M2/68‑7 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             >  1:39882789‑M2/1‑62 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             >  1:3757181‑M2/1‑62 (MQ=255)
         ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          <  1:37122001/68‑1 (MQ=255)
         ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          <  1:30493540/68‑1 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:16970388/1‑67 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:26001396/1‑67 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGt                                                         <  1:14016444/67‑1 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:38630590/1‑68 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:46389003/67‑1 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:52935045/67‑1 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:23462269/67‑1 (MQ=255)
               cTGGCTACGTAGCTGGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:13003498/67‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:47121939/68‑1 (MQ=255)
                   cTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgccgc                                                 <  1:17350905/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATTCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:54442464/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:25092125/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:2059886/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:3373597/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:27876932/68‑1 (MQ=255)
                     aCGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatc                                              >  1:29393521‑M2/1‑47 (MQ=255)
                     aCGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCcac                                              >  1:10172728/1‑68 (MQ=255)
                     aCGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCcac                                              <  1:43193887/68‑1 (MQ=255)
                       gTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACaa                                            <  1:57102692/68‑1 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCCCGCCGCCACAAt                                           >  1:41860379/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:52299114/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:48088962/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:49808945/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:21331969/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:15517759/1‑68 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:39073617/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:47572094/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          <  1:32101728/68‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          <  1:57871994/68‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          <  1:55545262/68‑1 (MQ=255)
                          gCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          >  1:15908577/1‑67 (MQ=255)
                          gCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          >  1:19189053/1‑67 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:34753018‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:7520915‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:4134037/1‑49 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGcc                                        <  1:42650776/67‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGcc                                        <  1:24170833/67‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:18451382/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:35335692/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTAATATTACACAAGCCGGATGGTCCCGCCCCCACAATTccc                                       >  1:25371002/1‑68 (MQ=255)
                            ttGGGATTATAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:33007090‑M2/1‑40 (MQ=255)
                             tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagcta                                      >  1:40316814‑M2/1‑39 (MQ=255)
                             tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagcta                                      >  1:53739968‑M2/1‑39 (MQ=255)
                             tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagcta                                      >  1:36303168‑M2/1‑39 (MQ=255)
                             tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCa                                      <  1:22647598/68‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:49432924/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:30093344/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:24780168/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:22213342/67‑1 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:50826566/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:53343554/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:39658408/1‑68 (MQ=255)
                                  ttttGGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:4089332/67‑1 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtcc                                  >  1:11102028/1‑66 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:23714830/67‑1 (MQ=255)
                                     tAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCaa                              >  1:45720540/1‑68 (MQ=255)
                                        tACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCg                           >  1:5656718/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCCCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCCTCAATCGt                          >  1:28465683/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATc                            <  1:15041701/66‑1 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:54809361/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:5954099/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:5112868/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTAATCAATCGt                          >  1:56976838/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGAAGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          <  1:34399035/68‑1 (MQ=255)
                                         aCAGCATACGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCACATTCATCAATc                            <  1:56219735/66‑1 (MQ=255)
                                            gCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTc                       >  1:18703728/1‑68 (MQ=255)
                                            gCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTc                       >  1:11309878/1‑68 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:31823242/1‑67 (MQ=255)
                                               tCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCAcc                    <  1:2707561/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:12417389/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:45040961/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:50260369/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:51769914/68‑1 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:7007820/1‑68 (MQ=255)
                                                    cggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                <  1:26783303/67‑1 (MQ=255)
                                                     ggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCgg              >  1:14769186/1‑68 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:30932799/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:38093522/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:11751698/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:26392085/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATCCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:42360450/67‑1 (MQ=255)
                                                          tttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAtt         <  1:6459790/68‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:32601168/68‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:18024331/68‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGACGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:44252373/68‑1 (MQ=255)
                                                               cACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCaa    <  1:9304110/68‑1 (MQ=255)
                                                                   |                                                                 
GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.