| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1948783 | NA (NA) | 3 (0.000) | 3/98 | NT | NA | noncoding (98/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3734349 = | NA (NA) | noncoding (26/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 852 total aligned reads displayed.
GGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCAT > CP009273/3734282‑3734416 | aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt < 1:13184181/68‑1 (MQ=255) aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:31361762/1‑66 (MQ=255) aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:55720868/1‑66 (MQ=255) aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:1783038/1‑66 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAGGCTTATCAGGCCTACATGATTTCt < 1:57284429/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:44573067/1‑65 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:25351160/1‑65 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:21328581/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:25031975/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:2027872/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:38530045/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:16466598/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:48039936/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:6923888/68‑1 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:30357158/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:39446032/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:52559106/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:20641548/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:54050791/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:37732841/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:23570373/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:51432478/1‑67 (MQ=255) gagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc > 1:37301487/1‑68 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:32864842/66‑1 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:53078586/66‑1 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:8138812/66‑1 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:10994907/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:57086488/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:48415001/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:12181496/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:1402388/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:7480493/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACCCTTATCAGGCCTACATGATTTCTGCAat > 1:50151017/1‑68 (MQ=255) cTGGGCTGAAAGTCACTAATAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat < 1:6103685/67‑1 (MQ=255) cTGGGCTGAAAGTCACTAAATATTGCCTGATGCGCTTCGCTTATCAGGCCTACATGATTTCTGCAat < 1:15233268/67‑1 (MQ=18) cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAata > 1:27287483/1‑68 (MQ=255) ttggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:17101875/66‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:43874664/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:36168597/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:40970356/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:36426846/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:10028452/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:35038607/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:38103896/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:22299724/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:12677325/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:19906624/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:57789542/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:30774455/68‑1 (MQ=255) ggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatatat > 1:45472452/1‑68 (MQ=255) ggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatatat > 1:25733965/1‑68 (MQ=255) gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACa < 1:52062135/50‑1 (MQ=255) gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:46140944/65‑1 (MQ=255) tGAAAGTCACTAAAAATTGCCTTATGCGCTACGCTTATCATGCCTACATGATTTCTGCAATATATTGa < 1:53653284/68‑1 (MQ=18) aaGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAtt > 1:42783108/1‑68 (MQ=255) cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaag < 1:35744396/68‑1 (MQ=255) cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaag < 1:18806335/68‑1 (MQ=255) aaaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaagaa < 1:47415266/68‑1 (MQ=255) aaaTTGCCTGATGCGCTACTCTTATCAGGCCTACATGATTTCTGCAATATATTTAATTTGGAAGAAtt < 1:41749657/68‑1 (MQ=255) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAtt < 1:13560400/68‑1 (MQ=255) aaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt > 1:33568612/1‑68 (MQ=255) aaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt > 1:22839961/1‑68 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAg > 1:1918421/1‑68 (MQ=255) cTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAgg < 1:39053021/67‑1 (MQ=255) cTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAgg < 1:5440844/67‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCg < 1:40407016/68‑1 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCg < 1:78731/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTTCATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa < 1:10552959/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg < 1:34546298/67‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg < 1:29088551/67‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa < 1:8789998/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa < 1:14852450/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa < 1:49114883/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa < 1:2424937/68‑1 (MQ=255) gcgcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGAt > 1:46852052/1‑68 (MQ=255) tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAgg < 1:4633415/68‑1 (MQ=255) tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAgg < 1:11255150/68‑1 (MQ=255) tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAgg < 1:26395501/68‑1 (MQ=255) tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAgg < 1:54862830/68‑1 (MQ=255) tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAg > 1:5605554/1‑67 (MQ=255) cGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCg < 1:15857475/68‑1 (MQ=255) cGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCg < 1:2835910/68‑1 (MQ=255) gCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGt > 1:32269244/1‑68 (MQ=255) atcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAc < 1:9525233‑M2/61‑1 (MQ=255) tcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAc > 1:26764070‑M2/7‑67 (MQ=255) tcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAc > 1:31807925‑M2/7‑67 (MQ=255) tcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAc > 1:11611895‑M2/7‑67 (MQ=255) aggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc > 1:35201964‑M2/5‑68 (MQ=255) ggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc > 1:2184418‑M2/4‑67 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAGTTTGTAGGCCGGATAAGGCGTTTAcgccgc < 1:39908121‑M2/66‑1 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccgc < 1:4238514‑M2/66‑1 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:2785175‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:29525758‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:56471304‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:24589240‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:50569482‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:18448221‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:6594168‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:49503475‑M2/2‑68 (MQ=255) cCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:43210951‑M2/2‑68 (MQ=255) | GGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCAT > CP009273/3734282‑3734416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |