| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2747582 = | 630 (0.900) | 43 (0.070) | 9/94 | NT | 8.4% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 411 (0.700) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
Only 100 of 1017 total aligned reads displayed.
CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTCGC > CP009273/2747538‑2747673 | aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt < 1:22709447/67‑1 (MQ=255) aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt < 1:19421205/67‑1 (MQ=255) tgccgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGc < 1:15405324‑M2/6‑1 (MQ=255) tgccgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGc < 1:14303456‑M2/6‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:37829397/68‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:34701055/68‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:19051846‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:7323814‑M2/8‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:6089094/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:26191857/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:47543716/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:3420701/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:3668199/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:41925653/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:1469926/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:23472636/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:29838915/66‑1 (MQ=255) tGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCa < 1:30951468/68‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:51771260/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:56803098/67‑1 (MQ=255) tggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCTTCTCAGGt < 1:16693098‑M2/15‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:30420209/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc > 1:9346679/1‑68 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc > 1:48062027/1‑68 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:40477099/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:4271466/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:13869473/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:15966103/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:8665236/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:57567633/67‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa < 1:20680557/67‑1 (MQ=255) cAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc < 1:44418041/68‑1 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTc > 1:56282818/1‑68 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTc > 1:12403906/1‑68 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa < 1:10076619/68‑1 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:40715250/1‑68 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:39441040/1‑68 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:32436390/1‑68 (MQ=255) cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa > 1:51365099/1‑67 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCCCCTCAACg < 1:1105204‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:26559084‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:46291850‑M1/59‑1 (MQ=255) cgcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa > 1:15083803/1‑68 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCTGGTACTGCTTCTGAGGTAGCGCATAAGCCACCTCAACGGCaa < 1:38459159/68‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCCGGTAGCGCATAAGCCACCTCAACGGCaa < 1:7987525/68‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa > 1:54135433/1‑68 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt < 1:50305996/67‑1 (MQ=255) aCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt > 1:39171083‑M1/2‑68 (MQ=255) CCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:42265108‑M1/67‑1 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:38838585‑M1/67‑1 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:25047152‑M1/1‑68 (MQ=255) CTGCAGCGGCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:13661055‑M1/1‑68 (MQ=255) TGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCCCCTGCCCGGCATTTTTAcc < 1:6742844‑M1/68‑1 (MQ=255) CAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:21172228‑M1/68‑1 (MQ=255) CAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:21805943‑M1/68‑1 (MQ=255) CAGCGTCACTAGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:2008377‑M1/68‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCACCGGCAATTTTACCTg < 1:26818539‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCTATTTTACCTg < 1:1154075‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACctt < 1:46825269‑M1/67‑2 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:45168146‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:52533298‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:53024460‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:44161323‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:54564886‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:35556330‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:24640922‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:31889042‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:33032215‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAATTTACCTg < 1:10557550‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:16422232‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:37260944‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:53529712‑M1/67‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTgg > 1:4330166‑M1/1‑65 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:55631561‑M1/66‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:3603921‑M1/66‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:22317662‑M1/1‑66 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:24015768‑M1/1‑66 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:33738746‑M1/66‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCAc > 1:55122077‑M1/1‑68 (MQ=255) tCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:48980836/1‑65 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:13233175/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:46548614/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:17361889/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:18484939/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:28439930/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTg < 1:35242140/68‑1 (MQ=255) aCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGt < 1:56134165/68‑1 (MQ=255) aCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGt < 1:28858681/68‑1 (MQ=255) aCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGt < 1:40102827/68‑1 (MQ=255) aCTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGt < 1:47165357/68‑1 (MQ=255) cTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTa > 1:25732971/1‑68 (MQ=255) gctgcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaaa > 1:27549986‑M2/9‑67 (MQ=255) tgcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAAcc < 1:45801554‑M2/61‑1 (MQ=255) gcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAAcc > 1:17913166‑M2/6‑66 (MQ=255) gTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:29417499‑M2/2‑68 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAACCCTCTTTc > 1:41487450/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:52084250/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:50806397/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:33346377/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:1187690/1‑67 (MQ=255) | CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTCGC > CP009273/2747538‑2747673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |