| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 634 (0.910) | 41 (0.070) | 18/96 | NT | 6.3% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 678 (1.130) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 1242 total aligned reads displayed.
TAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGC > CP009273/3348935‑3349068 | aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc > 1:27989066‑M2/1‑65 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc > 1:42162144‑M2/1‑65 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:31413178‑M2/68‑4 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:33078473‑M2/1‑63 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:44630447‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:36091491‑M2/67‑5 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:11562960‑M2/66‑5 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTCCCAcccgcctg > 1:21433914‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:3572198‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:48949389‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:13335674‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:12007660‑M2/1‑59 (MQ=255) ggAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGc > 1:23914959/1‑68 (MQ=255) aaCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAg > 1:2947935/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:30901833/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:21955490/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:56468231/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:19778088/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:55993484/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa < 1:48540238/68‑1 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:42725652/1‑68 (MQ=255) ctgctgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagca > 1:16839659‑M2/1‑54 (MQ=255) gctgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaaca < 1:28944110/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:19361322/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:20281741/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:10048455/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaa > 1:24199804/1‑67 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCCATTAGTACCACCCGCCTGGCAGaacaac < 1:3358788/68‑1 (MQ=255) tctgcCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagt > 1:22695496‑M2/2‑49 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCGATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcgcg < 1:2588293/68‑1 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAccc < 1:53633269/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat > 1:52254326/1‑68 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:40324877/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:11063318/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:28316774/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:45419139/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:16325628/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:32215696/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:39677043/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:12797185/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:15203848/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:53038190/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:2495315/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:30012929/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 1:25312828/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 1:13791592/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 1:7324687/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCg > 1:5399704/1‑68 (MQ=255) ggatATCACCCGCGCCATGCGTCTATTCGAACCCcccccctggcagcagcagttccagcatgttatcc > 1:17623783‑M2/1‑34 (MQ=255) atcatcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa > 1:20892309/1‑65 (MQ=255) atcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCg < 1:7847535/68‑1 (MQ=255) atcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCg > 1:44234237/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:46050389/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:46946753/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:55124521/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:641130/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:9337111/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:51474966/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:26874333/1‑68 (MQ=255) cgcgCCATGCGTCAAAAAGAACCAcccgcctgccagcagcagttccagcatgttatccatcgaactgg > 1:35170925‑M2/1‑24 (MQ=255) gcgcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTg > 1:39186800/1‑66 (MQ=255) gcCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgttatccatcgaactggag > 1:18102742‑M2/1‑21 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGACCTGCGTGCct > 1:26237741/1‑67 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCctt < 1:50151170/68‑1 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCct > 1:41448846/1‑67 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttct > 1:57383798/1‑68 (MQ=255) gTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGa < 1:55600125/67‑1 (MQ=255) gTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGa < 1:57006020/67‑1 (MQ=255) gTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGAc < 1:37346363/68‑1 (MQ=255) tCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt > 1:41773978/1‑68 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:157169/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:52638364/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:18600065/67‑1 (MQ=255) aTTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:50465857/1‑68 (MQ=255) ttAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGCCTTTa > 1:10511164/1‑67 (MQ=255) ttAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:46422356/1‑67 (MQ=255) ttAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:9064295/1‑67 (MQ=255) attACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:38349449/66‑1 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAAc > 1:57893890/1‑67 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:45115116/68‑1 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:27519966/68‑1 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:8261118/68‑1 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:31768116/1‑68 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:49405635/1‑68 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:34354905/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:14555613/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:50811135/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:5455402/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:30297422/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:32721111/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:3666738/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:38801323/1‑68 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:2336526/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:18962251/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:33921425/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:43370899/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:40849680/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTGCTTTGACTTTAACTCCATg < 1:37800704/68‑1 (MQ=255) accCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGc < 1:47964463/68‑1 (MQ=255) accCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGc < 1:4759587/68‑1 (MQ=255) | TAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGC > CP009273/3348935‑3349068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |