| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3851553 = | 666 (0.950) | 44 (0.080) | 13/86 | NT | 9.2% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 359 (0.670) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
Only 100 of 1020 total aligned reads displayed.
CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 | cgcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCa < 1:14573777/67‑1 (MQ=255)cgcgACGTTGTTGGGCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCa < 1:25100689/67‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:49110822/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:27467097/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:42522797/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:5580951/68‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:27942821‑M2/4‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:14198501‑M2/4‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:39100739‑M2/4‑1 (MQ=255) cggtttgaacgcctgcacggtccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg < 1:51233655‑M2/4‑1 (MQ=255) ggtttgtacgcctgCACGGGCCGGCCTGGGTAGCGTAGCTACCGGTAAATAGTCCGGCCCGTGCAGGc < 1:1639748‑M1/54‑1 (MQ=255) ggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGc < 1:52409879‑M1/54‑1 (MQ=255) gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGc < 1:1282864/67‑1 (MQ=255) gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg < 1:34182034/68‑1 (MQ=255) tttgtacgcctgcacgggccggactatttaccggtatctacgctaacccgtccggcccgtgCAGGCg < 1:50259762‑M2/6‑1 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt < 1:30090333/67‑1 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt < 1:21002469/67‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:23823081/68‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:3795774/68‑1 (MQ=255) gggTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:31846552/67‑1 (MQ=255) ggTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg > 1:30974237/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:43151124/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:37089575/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:19477351/1‑68 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:11130186‑M1/68‑1 (MQ=255) ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAaccgggga < 1:7167956‑M1/67‑4 (MQ=255) ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAATCCGGTGa < 1:9230028‑M1/67‑1 (MQ=255) ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:41901500‑M1/67‑1 (MQ=255) CGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc > 1:19054771‑M1/1‑68 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACa < 1:35936792‑M1/68‑1 (MQ=255) GGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg < 1:16957613‑M1/68‑1 (MQ=255) GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg < 1:1780188‑M1/68‑1 (MQ=255) CCGGTCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:29184756‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:53912718‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:51507262‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:34721289‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:3760142‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:26956722‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:26254245‑M1/1‑67 (MQ=255) CGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt > 1:15043998‑M1/1‑67 (MQ=255) actatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAg > 1:25608911‑M2/40‑68 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa < 1:55523026‑M1/49‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:35604488‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:49417204‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:33589562‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:57830236‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:45707120‑M1/68‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGACGAGGTGTAg < 1:54708355‑M1/67‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg > 1:29530362‑M1/1‑67 (MQ=255) ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGCACAGGTGTAGGCGGa > 1:3963272/1‑68 (MQ=255) ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa > 1:41239426/1‑68 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGaa > 1:56188253/1‑68 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:6086270/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:44089842/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:8054710/67‑1 (MQ=255) gCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAAtt > 1:10020537/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAATCCGGTGAACAGGTGTAGGCGGAATTaa > 1:24654922/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:33002428/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:40551345/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:28483205/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:20522984/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:44695837/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:47357380/1‑68 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:43445330/68‑1 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:4629406/68‑1 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGc < 1:50580677/66‑1 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGc < 1:15935511/66‑1 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:5290294/1‑68 (MQ=255) tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:21861777/1‑68 (MQ=255) aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa > 1:47821801/1‑68 (MQ=255) aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa < 1:10615706/68‑1 (MQ=255) ccGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAAt > 1:45268043/1‑68 (MQ=255) ggTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa > 1:7682698/1‑67 (MQ=255) ggTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATAc < 1:25960739/68‑1 (MQ=255) aaTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTc < 1:5505431/68‑1 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:23080561/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:20209913/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:21297492/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:22471906/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:36705916/1‑68 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCttcag > 1:35148208‑M2/14‑65 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:54314559‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:36290933‑M2/14‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGATTTAAAGCGAATACCTTccgccg > 1:40139665‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg > 1:48522483‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg > 1:13490172‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:32401824‑M2/56‑1 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:8681854‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:4682451‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:38755775‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:582965‑M2/7‑67 (MQ=255) ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:5702648‑M2/6‑66 (MQ=255) ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGAc < 1:31468762‑M2/63‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:17337862‑M2/64‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:12235366‑M2/64‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:11516751‑M2/64‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:671286‑M2/65‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc > 1:18559761‑M2/2‑68 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:53323888‑M2/67‑1 (MQ=255) acAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:30467192/67‑1 (MQ=255) | CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |