| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,702,966 | T→A | 7.5% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,702,966 | 0 | T | A | 7.5% | 1244.0 / 10.4 | 605 | R597R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (176/346); new base A (47/2); total (242/363) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.28e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 666 total aligned reads displayed.
AGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGC > CP009273/1702899‑1703030 | cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:24957684/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:22735831/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:11666032/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:27378986/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:15709605/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:31990380/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:17659180/66‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:26835614/66‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGc < 1:24103421/67‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:18541453/1‑68 (MQ=25) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGcc > 1:28940600/1‑68 (MQ=255) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCGGCTATTGCCCGCGcc > 1:33364731/1‑68 (MQ=11) cTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCGAGcg > 1:1717235/1‑67 (MQ=11) aaTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaa < 1:19121314/68‑1 (MQ=35) aTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaaa < 1:50737033/68‑1 (MQ=35) tGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaaa > 1:10947632/1‑67 (MQ=35) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgc < 1:56188082/68‑1 (MQ=35) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAg > 1:53891242/1‑67 (MQ=25) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCCGCTATTGCCCGCGCAAAAg > 1:12884411/1‑67 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCCGCTATTGCCCGAGCaaagg > 1:27638465/1‑65 (MQ=11) cAGAACACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:8571257/68‑1 (MQ=255) cAGAACAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:48159711/68‑1 (MQ=255) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCaa > 1:25677144/1‑67 (MQ=35) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:46829315/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:53289137/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:29316789/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:10026048/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:30105743/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:33136098/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:820381/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:5439666/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:39945000/68‑1 (MQ=37) cAGAACAACAGGTCGAGCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:42325557/68‑1 (MQ=255) gAAAAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTAAAGCCCGTGCCAAAGCGCGCAAGCt < 1:19482645/68‑1 (MQ=11) aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTg > 1:5744589/1‑68 (MQ=40) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGc < 1:14632203/65‑1 (MQ=39) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTgg > 1:43899563/1‑68 (MQ=39) caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGa < 1:40322136/68‑1 (MQ=37) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAc > 1:46112183/1‑68 (MQ=35) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAc > 1:35456666/1‑68 (MQ=35) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACa > 1:4954936/1‑67 (MQ=35) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCa > 1:34129792/1‑68 (MQ=35) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGAAAGCTGGAACAGCa > 1:5646593/1‑68 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACa < 1:24426008/64‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCa > 1:38748195/1‑67 (MQ=35) tCGATACGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCa > 1:21129994/1‑67 (MQ=25) aTCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAAcagcagcag > 1:7655862/1‑68 (MQ=11) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:44817135/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:20754724/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:30756056/68‑1 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAACGCGCGCCCGCTGGAACAGCAACAg > 1:25904679/1‑66 (MQ=11) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAGCAGCAACAg > 1:2625038/1‑66 (MQ=25) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCt < 1:55481584/68‑1 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAt < 1:43744142/68‑1 (MQ=35) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATg < 1:57740050/67‑1 (MQ=35) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCggt > 1:42930370/1‑67 (MQ=39) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCgg > 1:41756051/1‑67 (MQ=39) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGa > 1:51324046/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGa > 1:2379237/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGa > 1:41144384/1‑68 (MQ=40) ctgccgTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGaa < 1:36675088/66‑1 (MQ=255) ccgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCggt > 1:34918573/1‑66 (MQ=39) ccgccgTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGaa < 1:56717867/68‑1 (MQ=255) cgTGGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:47550175/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:10287527/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:43338878/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:32418189/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:35766653/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:16329459/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:38012705/67‑1 (MQ=255) gTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCaga < 1:6462992/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaag < 1:38454738/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaag < 1:54819747/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaag < 1:51933771/68‑1 (MQ=255) cGAAGCCGCTATAGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaa < 1:18036538/67‑1 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga < 1:21828607/68‑1 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga < 1:504096/68‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg < 1:45380967/68‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg > 1:13729000/1‑68 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg < 1:28354695/68‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAgg < 1:5278794/68‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAg < 1:40703010/67‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAg < 1:20247638/67‑1 (MQ=255) aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTAGa > 1:1058229/1‑68 (MQ=255) aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGa > 1:26545785/1‑68 (MQ=255) aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGa > 1:44331805/1‑68 (MQ=255) aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGa > 1:5850904/1‑68 (MQ=255) gCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATcc > 1:12464844/1‑68 (MQ=40) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTTATGCGGAACCAGAAGCACAGGTCGATcc > 1:7015693/1‑67 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTATTGGGCAAACAGAAGAGCAGGGCGCTcc > 1:9156139/1‑67 (MQ=14) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGATCCAGAAGAACAGGTCGATcc > 1:23160958/1‑67 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATcc > 1:15171877/1‑67 (MQ=40) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATcc > 1:48848954/1‑67 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATcc > 1:31202240/1‑67 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATcc > 1:39363295/1‑67 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCcgc > 1:30423441/1‑68 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc > 1:37237380/1‑68 (MQ=40) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc > 1:49865798/1‑68 (MQ=40) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCcgc > 1:14295379/1‑68 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCcgc > 1:22201481/1‑68 (MQ=255) | AGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGC > CP009273/1702899‑1703030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |