| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,036 | G→C | 5.0% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,036 | 0 | G | C | 5.0% | 1271.5 / 8.0 | 515 | A621P (GCC→CCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (285/191); new base C (2/27); total (288/227) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.18e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 589 total aligned reads displayed.
AAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702970‑1703103 | aaaGCGCGCAAGCTTGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgc < 1:37045468/68‑1 (MQ=255)aaaGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgc < 1:20380650/68‑1 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAgcg > 1:10069752/1‑66 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGCTCCGCGCAAAgcc > 1:52281247/1‑67 (MQ=25) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcg > 1:23936509/1‑66 (MQ=25) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:48511092/1‑67 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:4682057/1‑67 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcc > 1:42136099/1‑67 (MQ=25) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccg > 1:27064063/1‑67 (MQ=35) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgccgc > 1:34727456/1‑68 (MQ=25) gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGt < 1:35114599/67‑1 (MQ=35) gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCCGta > 1:41851490/1‑67 (MQ=11) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:4583007/68‑1 (MQ=35) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:29676890/68‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACATGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGc < 1:25887897/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:53461048/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:38494004/67‑1 (MQ=35) aCAGCAACAGGCTAATGCGTATCGATAAGAACCGTTAGCTCCGCGCATAGCCGACGGCGAAGCCGCTa > 1:47019740/1‑68 (MQ=2) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGCCGCCGCTa > 1:31164625/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTa > 1:34092388/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:23194843/1‑68 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTa > 1:58108093/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTa > 1:16362331/1‑68 (MQ=255) cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAt > 1:12564377/1‑68 (MQ=35) aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTAtt > 1:52742302/1‑68 (MQ=255) accAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:54361361/65‑1 (MQ=25) aGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCgc > 1:28877020/1‑67 (MQ=11) aGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt > 1:12962734/1‑68 (MQ=35) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCTTg > 1:33605525/1‑67 (MQ=25) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTCGCCGCCGCTATTGCCCgc > 1:5550550/1‑65 (MQ=11) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCgag > 1:727701/1‑65 (MQ=11) cTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGcc > 1:46447869/1‑68 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGAAGCCGCTATTGCCCGAGc > 1:19028181/1‑67 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:6281376/65‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:18859892/66‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:14526560/66‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:57188776/66‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:43437968/1‑68 (MQ=25) aaTGCGGAACCAGAAGAACAGCTCGATCCGCGCAAAGCCGCCGTGGACGCCGCTATTGCCCGAGCCaa > 1:49990176/1‑68 (MQ=11) tGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa > 1:47738475/1‑67 (MQ=25) tGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGACGCCGCTATTGCCCGGGCCaaa > 1:32120841/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGCAGCCGCTATTGCCCGCGCaaagg > 1:28275858/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGAAGCCGCTATTGCCCGAGCGAAAg > 1:33069831/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCTTGCGAACGc > 1:42859506/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa > 1:30691092/1‑66 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGc > 1:37654407/1‑68 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCCCAAg > 1:34352218/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCAAAAGc > 1:20988902/1‑68 (MQ=11) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCa > 1:9147142/1‑68 (MQ=255) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCCCGCa > 1:44461507/1‑68 (MQ=11) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCa > 1:11944952/1‑68 (MQ=255) ccAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGCCCGGGCGAAGGCCCGCaa > 1:36539178/1‑68 (MQ=11) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAGGCCCGCaa > 1:10813377/1‑68 (MQ=11) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCaa > 1:21713843/1‑68 (MQ=25) cAGAATAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:35892867/68‑1 (MQ=255) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:31580661/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:5623503/68‑1 (MQ=40) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCACGCAAGCTg > 1:33359767/1‑68 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTg > 1:11358741/1‑68 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTg > 1:40060844/1‑68 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAGCACGCAAGCTg > 1:51769290/1‑68 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCGCGCCAAAGCCAGCAAGcgg > 1:24942280/1‑66 (MQ=11) aagaaCAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTg > 1:38992917/1‑68 (MQ=14) gaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAGCACGCAAGCTGGa > 1:25350019/1‑68 (MQ=255) caaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:49317489/67‑1 (MQ=18) aaCAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCCCGGGCCAAGGCACGCAAGCGGGa > 1:50562413/1‑67 (MQ=11) aaCAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGGGCCAAAGCACGCAACCTCGa > 1:18193302/1‑67 (MQ=11) tcAGTTCGATCCGCGCAAAGCCGACGTCGAAGCCGCTATCGCCCGTGCCAAAGCACGCAAGCTGGa < 1:15645175/65‑1 (MQ=11) ccAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAAc < 1:6872612/67‑1 (MQ=255) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAAc > 1:32568774/1‑68 (MQ=25) cAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa < 1:24242078/68‑1 (MQ=25) tCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:8431067/1‑67 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa < 1:43538238/64‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGcc > 1:15232233/1‑66 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:797600/66‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:18651931/66‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:36241955/1‑67 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:41211136/1‑67 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGTCCAAAGAACGCAAGCGGGACCCGCa > 1:51485195/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:23582150/1‑67 (MQ=25) gcGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:33902139/65‑1 (MQ=25) tCCTCGTAAAGCAGCCGTCGAAGCCGCTATGGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:13263234/68‑1 (MQ=11) tCCGCGTAAACCCGCCGTCGAAGCAGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:35488620/68‑1 (MQ=11) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:50916571/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:384058/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:22132035/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:44000555/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:26314279/68‑1 (MQ=255) tCCGCGCAAACCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg < 1:30154826/67‑1 (MQ=255) tCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:17198950/68‑1 (MQ=25) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAggg > 1:53746601/1‑67 (MQ=25) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:13726060/1‑66 (MQ=35) cgcgCAAAGCCGCCGTCGCAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt > 1:26740593/1‑68 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:45249499/1‑68 (MQ=35) aaaCCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:19601291/67‑1 (MQ=25) aaaCCCGCCGTCGAAGCCGCTATCGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:20108005/67‑1 (MQ=11) aaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcc > 1:48922153/1‑68 (MQ=37) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:22699094/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:56900096/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:48142197/1‑68 (MQ=255) | AAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702970‑1703103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |