| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,328 | A→C | 8.6% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,328 | 0 | A | C | 8.6% | 1560.9 / 23.8 | 694 | intergenic (+367/+247) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (229/344); new base C (9/58); total (239/455) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.90e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 698 total aligned reads displayed.
TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTG > CP009273/3263261‑3263395 | ttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGa < 1:3224252/68‑1 (MQ=35) ctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGaa > 1:43980634/1‑67 (MQ=35) ttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCgg < 1:2825105/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCggg < 1:22584655/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt < 1:47491616/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt < 1:11572631/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt < 1:18216963/68‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGttt > 1:18942399/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGttt > 1:31134523/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAAACCGCCGAAGCCGGgtt > 1:3318711/1‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAATCGGGttttt > 1:8285111/1‑68 (MQ=255) aatgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:55648601/66‑1 (MQ=25) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:39134599/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:3798862/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:5622146/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:13139419/68‑1 (MQ=35) gtgtCGTGGACAGTCATTGATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg > 1:44846596/1‑68 (MQ=255) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAAACCGCCGCAGCGGGTTTTTACGt > 1:56885879/1‑68 (MQ=255) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:39480096/1‑68 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:10024304/68‑1 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:41821069/1‑68 (MQ=40) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGGAGAACa > 1:33661305/1‑68 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGATTTTTACGTAAAACa > 1:19291580/1‑68 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCACCGAAGCGGGTTTTTACGTtaaaaa > 1:36466561/1‑66 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:52938750/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:22044984/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:5979534/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:57975819/1‑68 (MQ=25) cAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGt > 1:18433755/1‑68 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 1:5656191/67‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 1:4350441/67‑1 (MQ=40) ttcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa > 1:23838254/1‑65 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:24940276/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:30409755/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:4882178/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:53362632/1‑67 (MQ=255) atCTTTCTGACCATCCAAAAGTAAAAACCCGCATAAGCGGGTTTTTACGAAAAACACGTCAAACTGAc > 1:24165441/1‑68 (MQ=14) ttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt > 1:25333520/1‑68 (MQ=40) cTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAACATGACCGaga > 1:32032330/1‑65 (MQ=14) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTATAACAGGTGAAACTGCACGAAAAg > 1:34481718/1‑67 (MQ=14) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:6529227/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:57286048/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:37616203/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:50017873/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc < 1:30133993/68‑1 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc < 1:40925123/68‑1 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc < 1:20295187/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:35667434/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:51801076/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:55130963/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:46518046/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:44282022/68‑1 (MQ=255) atgTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:12039174/66‑1 (MQ=255) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:49373876/68‑1 (MQ=40) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:7749010/68‑1 (MQ=40) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:42421435/68‑1 (MQ=40) aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCtttt > 1:31729504/1‑68 (MQ=255) tataaaCCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:35089693/65‑1 (MQ=11) tataaaCCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:46119004/65‑1 (MQ=255) tAAAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:14434847/68‑1 (MQ=255) cataaaCCCGCCGCATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:25797989/65‑1 (MQ=11) acaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:16993781/66‑1 (MQ=255) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:29228606/68‑1 (MQ=255) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:9634467/68‑1 (MQ=35) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:17331794/68‑1 (MQ=35) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:42787141/67‑1 (MQ=35) taaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:36102471/67‑1 (MQ=25) caaaCCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:45530529/67‑1 (MQ=255) aaaaCCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:15424593/68‑1 (MQ=25) aaaaCCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:15913169/68‑1 (MQ=25) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:12575095/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:23099117/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:48431971/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:55938108/68‑1 (MQ=35) aaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat < 1:21589568/68‑1 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGTATAg > 1:50542778/1‑68 (MQ=255) cccGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg > 1:11116261/1‑68 (MQ=35) ccgccgAATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:47005441/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:33950627/68‑1 (MQ=14) ccgccgAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:2734454/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:14693352/68‑1 (MQ=37) gccgTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:13804440/68‑1 (MQ=14) gccgCATCGGTTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:52555733/68‑1 (MQ=14) gccgCATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:40589236/68‑1 (MQ=14) gccgCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:547460/68‑1 (MQ=255) gccgCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:20842572/68‑1 (MQ=255) gccgCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:6879783/68‑1 (MQ=255) gccgCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:19962869/68‑1 (MQ=255) gccgCACCGGTTTTTTACGTAAAACAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:38399868/68‑1 (MQ=11) gccgCACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:50981381/68‑1 (MQ=11) gccgAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:32699595/68‑1 (MQ=255) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGTTATAgtgt < 1:21296137/68‑1 (MQ=255) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:9068556/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:106444/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:16191103/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:17834377/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:28941167/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGACGCTTTCTTTTGGGTATAgtgt < 1:22810717/68‑1 (MQ=255) gccgAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:41411392/68‑1 (MQ=255) gccgAACCGGGTTATTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:26880011/68‑1 (MQ=255) | TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTG > CP009273/3263261‑3263395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |