| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,441 | A→C | 7.7% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,441 | 0 | A | C | 7.7% | 1363.7 / 11.6 | 543 | intergenic (+480/+134) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (269/196); new base C (29/21); total (298/245) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 548 total aligned reads displayed.
TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 | tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:27993357/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAATCGGGt > 1:25489610/1‑68 (MQ=25) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:10067347/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:17576864/68‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGgtt > 1:46946023/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCcggggt > 1:25927526/1‑65 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:43811502/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:34588354/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGCAGCGGGttt > 1:8614991/1‑68 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATATTTCAGCCCCAACAAAAACAAAAAACCGCCGCAGCGCGttg > 1:48511287/1‑67 (MQ=2) gTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:26350740/1‑68 (MQ=25) ataGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:29035468/1‑68 (MQ=25) ataGTGTCGTGGACAGTCATTCATCTTTCTGGAAAACCAAAATCAAAAACCCCCCGAACACGGttttt > 1:50111483/1‑68 (MQ=2) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:3599897/1‑68 (MQ=35) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAACCAAAAACCCGCCGAAGCGGGgtttt > 1:12784065/1‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCCAAGCGGGttttt > 1:52450573/1‑68 (MQ=11) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:13284024/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:57957929/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:55935893/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:7956175/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:37432450/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:21797996/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc > 1:4216808/1‑68 (MQ=25) aGTGTCGTGGACAGTCATTCATCGTTCTGCCCCTCCAAAAGCAAAAACCCGCCCAACCGGGTTTTTAc > 1:30581024/1‑68 (MQ=11) aGTGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAATCAAAAACCCGCCGCAGCGGGTTTTTAc > 1:34942307/1‑68 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:7125592/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCGTTCTGCCCCTCCAAAAGCAAAAACCCGCCCAACCGGGGTTTTACg > 1:33295295/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:39545461/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCCGGTTTTTAAGTAAACCa > 1:23288887/1‑68 (MQ=255) aCAGTCATTCTTCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:32967493/67‑1 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:584542/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:20605348/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:20174937/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:6333992/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:11641940/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:18620982/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCAACAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:1613539/1‑68 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg < 1:5065375/63‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:10409098/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:2776296/1‑67 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTgt < 1:41712339/68‑2 (MQ=25) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTgc > 1:31960963/1‑66 (MQ=25) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:29730089/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:3876571/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:43136697/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:44978338/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:24461862/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:14841671/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:13881586/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:28370650/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:10582885/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTGTTTACGTAATCCACGTCAAACAGa > 1:18418187/1‑67 (MQ=11) tttCTGCCCCTCCACAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa < 1:35213608/68‑1 (MQ=255) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa > 1:56585451/1‑68 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa > 1:42492268/1‑68 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACAGACCGa > 1:37835828/1‑68 (MQ=25) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:46091893/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:12045341/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:40832203/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGc < 1:9651606/68‑1 (MQ=35) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCgg > 1:35546875/1‑67 (MQ=18) cacaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttc < 1:27071941/65‑1 (MQ=255) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAGCAGGTGAAACTGACCGATAAGCCGctt > 1:47312169/1‑66 (MQ=25) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttc < 1:401332/68‑1 (MQ=40) aaaaaTCAAAAACCCGCCGCAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttc < 1:3410652/67‑1 (MQ=14) acaaGCACAAACCCGCCGCATCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttct < 1:10798722/66‑1 (MQ=14) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:28576924/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:1691793/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGcgttcttt > 1:55267020/1‑68 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:15335758/1‑68 (MQ=40) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:39063830/1‑68 (MQ=39) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:54239148/1‑68 (MQ=39) cttaaaCCCGCCGAATCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:23813318/65‑1 (MQ=11) cataaaCCCGCCGCACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:40480453/65‑1 (MQ=11) cataaaCCCGCCGAATCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:12454728/65‑1 (MQ=255) cAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:48063015/1‑68 (MQ=37) cAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:45715051/68‑1 (MQ=37) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:16322468/67‑1 (MQ=35) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:57194587/67‑1 (MQ=35) taaaCCCGCCGTATCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:44414247/67‑1 (MQ=11) taaaCCCGCCGAATCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:51259162/67‑1 (MQ=11) taaaCCCGCCGAACCGGGTTTTTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:14474887/67‑1 (MQ=11) aaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:31238279/68‑1 (MQ=35) aaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat < 1:21221340/68‑1 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:55006593/1‑67 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:11218560/1‑67 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg < 1:30091787/68‑1 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTGGGGtata > 1:6736402/1‑67 (MQ=25) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGtata > 1:32203126/1‑67 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc < 1:52760217/68‑1 (MQ=37) gccgAATCGGTTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:18164859/68‑1 (MQ=255) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:53414152/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:37007762/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:15637363/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:49548236/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:4881649/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:19129347/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:44927691/68‑1 (MQ=40) ccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcg > 1:6978472/1‑66 (MQ=39) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtcgt < 1:22714083/68‑1 (MQ=40) | TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |