| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,554 | A→C | 7.5% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,554 | 0 | A | C | 7.5% | 1561.1 / 19.4 | 622 | intergenic (+593/+21) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (309/236); new base C (20/36); total (329/293) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.99e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 630 total aligned reads displayed.
TTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCA > CP009273/3263487‑3263617 | ttctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa < 1:35190796/68‑1 (MQ=35) ttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg < 1:50268415/68‑1 (MQ=35) ttGGGTATAGCGTCGTGGACAGTCATTCAACTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg > 1:27022092/1‑68 (MQ=25) tGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:15397520/68‑1 (MQ=35) gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:10027122/68‑1 (MQ=35) ggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAACCAAAAACCCGCCGCAGCGGGtt > 1:47008261/1‑68 (MQ=255) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:837413/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAACCGCCGCAGCGGGttt > 1:24326201/1‑68 (MQ=255) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:22790930/1‑68 (MQ=35) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:55010410/68‑1 (MQ=35) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:52877579/68‑1 (MQ=35) gCGTCGTGGCCAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGCAGCGGGTTTTTACg > 1:52265392/1‑68 (MQ=11) gCGTCGTGGACAGTCATTCATCTTTCTTCCCCAACAAAAGCAAAAACCCGCCGCATCGGGGTTTTa > 1:51380454/1‑66 (MQ=11) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:17962015/1‑68 (MQ=33) gCGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:10509784/1‑68 (MQ=18) gCGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCCCCGAAGCCGGTTTTTACg > 1:57847363/1‑68 (MQ=11) cgtcgtGGACAGTCATTCATCTTTCTGACCAACCAAAATCAAAAACCCCCCGAAGCGGGTTTTTACGt > 1:38489545/1‑68 (MQ=11) ggACAGTCATTCATGTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:33403009/1‑68 (MQ=25) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:44585276/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGACCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:23648489/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAATAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:31798652/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:7959379/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:41165304/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:8699265/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:34710794/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:11893601/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:13981796/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:23214751/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:30728489/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:41480898/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:9343451/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:6128106/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:21577617/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACACGCCGAAGCGGGTTTTTAAGTAAATCAgg > 1:37808078/1‑68 (MQ=11) cactcattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:35644761/65‑1 (MQ=25) atgTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg < 1:4278016/65‑1 (MQ=25) aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTg > 1:5183742/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:44111744/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:21033557/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:12382206/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:37247045/66‑1 (MQ=35) cattcatCTTTCTCCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:45315218/67‑1 (MQ=25) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg > 1:55880415/1‑68 (MQ=35) cggtcagtttcacctgatttacgtaaaaacccgcCGAAGCGGGTTTTTACGTAAATCAGGTGATACTg > 1:53990969‑M2/35‑68 (MQ=255) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:50826126/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:39695342/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:27670653/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:36326719/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:2596782/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:56625901/1‑67 (MQ=35) tCTATCTGCCACTCCAAAATCAAAAACCCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGAcc < 1:5714406/68‑1 (MQ=11) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCg < 1:7522898/68‑1 (MQ=35) tCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATa > 1:24731721/1‑68 (MQ=35) cTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa < 1:12915771/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:15736619/1‑67 (MQ=35) ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGcc > 1:16352107/1‑68 (MQ=35) ccacTCAAAAAGCTCAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:30347162/64‑1 (MQ=11) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:19678328/1‑68 (MQ=35) tCCACAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:20538266/68‑1 (MQ=255) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:40651157/68‑1 (MQ=40) acaaGCACAAACCCGCCGTACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCt < 1:19907490/66‑1 (MQ=14) aaaaGCATAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCt < 1:26666321/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGTGGAAACTGACCGATAAGCCGGGTTCt < 1:14954532/68‑1 (MQ=14) aaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt > 1:43315892/1‑64 (MQ=40) aatcAAAAACCCGCCGCATCGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:2340051/65‑1 (MQ=17) aaGCACAATCCGGCCGCACCGGGTTTTTACGTAAAACAGGTAAAACTGACCGATAAGCCGGGTTCTGt < 1:32873161/68‑1 (MQ=14) aaGCAAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:42522170/68‑1 (MQ=17) aaGCAAAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:17630293/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:25459657/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:166647/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:48992849/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:48138440/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:18307255/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:41900213/68‑1 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc > 1:54481485/1‑67 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:49777510/1‑68 (MQ=255) cacaaaCCCGCCGCACCGGTTTATTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGt < 1:11601978/65‑1 (MQ=11) acccgcCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:39814081‑M2/62‑1 (MQ=255) acccgcCGCAACGGTTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:22452653‑M2/62‑1 (MQ=255) acccgcCGAAGCGGGTTTTTACGTAAATCAGGTGAACCTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:38293922‑M2/62‑1 (MQ=255) cccgcCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg > 1:4551003‑M2/6‑68 (MQ=255) cccgcCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg > 1:4738137‑M2/6‑68 (MQ=255) cccgcCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTGTGGTGGagag > 1:17219307‑M2/6‑68 (MQ=255) cccgcCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTGTGGGGGagag > 1:18773710‑M2/6‑68 (MQ=255) ccgcCGGAGCGGGTTATTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:40195840‑M2/64‑1 (MQ=255) ccgcCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:38133308‑M2/64‑1 (MQ=255) ccgcCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:14493652‑M2/64‑1 (MQ=255) ccgcCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:44819799‑M2/64‑1 (MQ=255) ccgcCGAACCGGTTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:1359289‑M2/64‑1 (MQ=255) cgcCGCAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc < 1:2506658‑M2/65‑1 (MQ=255) cgcCGAAGCGTGTTTTTAGGTAAATCATGTGAAACTGACCTATCAGGCGGGTTCTGTCGTGGACAGTc < 1:668907‑M2/65‑1 (MQ=255) cgcCGAAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc < 1:45153388‑M2/65‑1 (MQ=255) ggcgAAGCGGGTTTTTAAGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:33882990/66‑1 (MQ=21) gcCTAAGCGGGTTTTTACTTAAATCCGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa < 1:55446608‑M2/66‑1 (MQ=255) gcCGCATCGGTTTATTACGTACATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa < 1:29623366‑M2/66‑1 (MQ=255) gcCGCAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa < 1:28628588‑M2/66‑1 (MQ=255) gcCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa < 1:28080198‑M2/66‑1 (MQ=255) gcCGAAGCGGGTTTTTACTTAATTCACGTGAAACTGACCGATAATCCGGGTTCTGTCGTGGACAGTCa < 1:11144660‑M2/66‑1 (MQ=255) gcCGAAGCGGGTTTTTACGTAAATCCGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa < 1:46135668‑M2/66‑1 (MQ=255) gcCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:36638906‑M2/3‑68 (MQ=255) | TTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCA > CP009273/3263487‑3263617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |