| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 356,924 | C→T | 100% | intergenic (+67/+36) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 356,924 | 0 | C | T | 100.0% | 2219.1 / ‑6.7 | 609 | intergenic (+67/+36) | cynX/lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (250/350); minor base G (0/8); total (251/358) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 609 total aligned reads displayed.
GCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTT > CP009273/356859‑356988 | gCGACTCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCt < 1:17539389/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:10406028/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:48432010/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:44979563/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:34386876/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:33205653/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:32390383/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:30161682/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:27262686/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:16601691/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:10892806/68‑1 (MQ=255) gACGCTTGTTCCTCAGCTTTGTTGATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:40295045/68‑1 (MQ=37) gCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:5033587/1‑68 (MQ=255) cTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:5234476/1‑67 (MQ=255) ttGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAgc < 1:25833924/68‑1 (MQ=255) gTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAgcgc < 1:57068548/68‑1 (MQ=255) ttCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa > 1:20250900/1‑68 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa > 1:49542589/1‑67 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc < 1:28611826/68‑1 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc < 1:41373456/68‑1 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACATGTAGGTCTGATAAGCGCAGc > 1:14188118/1‑68 (MQ=255) ccTGCGCTTTGATCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAGGCGCAGc < 1:21158762/68‑1 (MQ=38) cTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGACCTTGTAGGGCTGATAAGCGCAGCg < 1:16060306/68‑1 (MQ=255) cTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCg < 1:25279416/68‑1 (MQ=255) cTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCg < 1:23061687/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:22152487/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:21799433/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:4401883/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:32655109/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:51489707/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:2555575/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:7599145/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:26783163/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:3096828/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:38051407/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:29104916/68‑1 (MQ=255) cgcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTa > 1:53175698/1‑67 (MQ=255) gcTTTGTTCATGCCGGATGCGTCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:54049752/1‑68 (MQ=38) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:11168666/1‑68 (MQ=255) ttGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAgg < 1:27997411/68‑1 (MQ=255) ttGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAgg < 1:18567224/68‑1 (MQ=255) ttCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:6881965/59‑1 (MQ=255) tCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATACGCGCAGCGTATCAGGCAAt > 1:31729299/1‑68 (MQ=255) tGCCGGATGCGACTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAtttt > 1:43381556/1‑68 (MQ=25) ccGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:52105399/1‑68 (MQ=255) ccGGATGCGGCTAATGTAGATCGCTGAACATGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:52840698/1‑68 (MQ=37) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:37028287/67‑1 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:39214061/67‑1 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCATTTTTTATAAtt > 1:56633845/1‑68 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAtt > 1:19735032/1‑68 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAt < 1:849259/67‑1 (MQ=255) aTGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:32114463/40‑1 (MQ=255) tGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGAc > 1:53613152/1‑68 (MQ=255) tGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGAc > 1:15602322/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAAGTGACg < 1:57702424/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:40786600/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:46396481/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:8098337/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:12971804/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:51264904/1‑68 (MQ=255) tAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGa > 1:48988659/1‑68 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:50552600/68‑1 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:5495534/68‑1 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:37436525/68‑1 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:46980314/68‑1 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAttt > 1:16997162/1‑46 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:5924860/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:6534699/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:47366291/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:8877455/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:28444472/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:24370490/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:31127203/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:38957646/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:1162398/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:19074958/1‑68 (MQ=255) tCGCTGAACTTGTAGGACTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAATCa > 1:41984666/1‑68 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:2956503/1‑66 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:10021654/1‑66 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:35772942/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:19328098/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:34873012/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:18118059/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:43039507/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:13634573/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:17224541/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:14529435/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:12435910/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:12231894/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:4813228/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACt < 1:45891868/67‑1 (MQ=255) gAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACttt < 1:39904556/68‑1 (MQ=255) gAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACttt > 1:7272034/1‑68 (MQ=255) aCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtat > 1:54667806/1‑68 (MQ=255) aCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtat > 1:55429901/1‑68 (MQ=255) aCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtat > 1:44405371/1‑68 (MQ=255) aCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtat < 1:15137970/68‑1 (MQ=255) gTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATc < 1:33852879/68‑1 (MQ=255) tAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt > 1:2639398/1‑68 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:23585699/67‑1 (MQ=255) | GCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTT > CP009273/356859‑356988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |