New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3202572	334 (0.540)	27 (0.050)	7/92	NT	9.3%	coding (1190/1464 nt)	ttdT	L‑tartrate/succinate antiporte
	?	CP009273	= 3202615	255 (0.500)					coding (1233/1464 nt)	ttdT	L‑tartrate/succinate antiporte

CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3202498‑3202572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccagcgcAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  <  CP009273/3202615‑3202550                                                                                                                                               atGTTATTCGCCAACTATGGTGATGGTGGCGTTGATTGTGCTTTTTTATCTACTGCGCTACTTTATCG                                                                           <  1:33942117/66‑1 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:34467995/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:23104896/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:21901993/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:23250847/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:20804999/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:23726426/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:49752817/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:45541731/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:30341622/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:50866167/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:32882937/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:16424339/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:39393229/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:37603179/1‑67 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:10296261/1‑67 CGGTTATTCGCCAACGATGGTGACGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC                                                                            >  1:3529935/1‑67  GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG                                                                           >  1:17564452/1‑67  GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG                                                                           >  1:34487409/1‑67  GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG                                                                           >  1:42852048/1‑67  GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG                                                                           <  1:41317307/67‑1  GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG                                                                           >  1:11337117/1‑67     TATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCA                                                                        >  1:37807620/1‑67     TATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCA                                                                        >  1:37749594/1‑67      ATTCGCCATCGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:15843369/68‑1      ATTCGCCAACGCTGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:14400339/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:7870136/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      >  1:26333594/1‑68      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:7928985/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:19500954/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:41192083/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:18594165/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:44215358/68‑1      ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGGGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:41713908/68‑1      ATTCGCCAACGATGGCGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC                                                                      <  1:23162347/68‑1       TTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG                                                                     <  1:14956339/68‑1       TTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG                                                                     <  1:49362810/68‑1       TTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG                                                                     <  1:50904935/68‑1        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC                                                                    <  1:50475745/68‑1        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC                                                                    <  1:6095760/68‑1        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC                                                                    <  1:46363008/68‑1        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC                                                                    <  1:24900363/68‑1        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC                                                                    <  1:21004297/68‑1        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG                                                                     >  1:42391146/1‑67        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG                                                                     >  1:43982191/1‑67        TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG                                                                     >  1:49261584/1‑67         CGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGCA                                                                   <  1:34179080/68‑1                            GGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGT                                                 <  1:38387739/67‑1                                        GGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGG                                    <  1:44059280/68‑1                                        GGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGG                                    <  1:29873392/68‑1                                        GGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGG                                    <  1:48359656/68‑1                                                  CTACTGCGCTACTTTTTCGCCAGCGCCGCAGCAATCATCGTCGGTGCGAGCGCGGAGGTATACGCCGT                          >  1:45460388/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCTATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:26721697/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCCATCCTCATCGGTGCGAGAGCGGAGGGATCCGCCGT                          >  1:33696879/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGCGCGGAGGTATACGCCGT                          >  1:22372900/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:71906/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:6889621/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:9465391/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:12572904/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:17636026/1‑68                                                  CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT                          >  1:22400519/1‑68                                                    ACTGCGCTACTTTTTCGCCAGCGGAGCAGCTATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTG                         >  1:50249949/1‑67                                                    ACTGCGCTACTTTTTCGCCAGCGGAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTG                         >  1:30811345/1‑67                                                    ACTGCGCTACTTTTTCGCCAGCGCTGCAGCATTGATCATCGGTGCGAGAGCGGAGGTGTACGCCGTG                         >  1:40588899/1‑67                                                    ACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCTTCGGTGCGAGAGCGGAGGTATACGCCGTG                         >  1:35249281/1‑67                                                    ACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGCGCGGAGGTATACGCCGTG                         >  1:38814771/1‑67                                                      TGCGCTACTTTTTCGCCAGCGCAGCAGCAATCCTCATCGGTGCGAGAGCGGAGGTATACGCCGTGGC                       >  1:27107386/1‑67                                                      TGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGC                       >  1:13329134/1‑67                                                       GCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTTTACGCCGTGGCGg                     >  1:35676147/1‑67                                                       GCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGC                       >  1:26627364/1‑66                                                       GCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGC                       >  1:13521994/1‑66                                                       GCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGC                       >  1:6200955/1‑66                                                         GCTACTTTTTCGCCAGCGCGGCAGCGATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTG                   >  1:1842081/1‑68                                                         GCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTG                   >  1:20390926/1‑68                                                              TTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAA              >  1:32399003/1‑68                                                              TTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAA              >  1:40505845/1‑68                                                                   CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGT         >  1:42202974/1‑68                                                                   CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGAGGCGCTGGCGAAAAAGT         <  1:6480849/68‑1                                                                     CCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTA        >  1:35261731/1‑67                                                                     CCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTA        >  1:13522376/1‑67                                                                      CAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGC      >  1:19163035/1‑68                                                                         CGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCA   >  1:25967155/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:10045282/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:39569109/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:35128835/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:18727552/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:34937673/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:48102416/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  >  1:34504861/1‑68                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCA   <  1:41815856/67‑1                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCA   <  1:34587028/67‑1                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC    <  1:19663326/66‑1                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC    <  1:4949035/66‑1                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC    <  1:36409343/66‑1                                                                          GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC    <  1:30599261/66‑1                                                                                                                                               CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3202498‑3202572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccagcgcAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG  <  CP009273/3202615‑3202550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.