| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3487121 | NA (NA) | 5 (0.010) +C |
5/110 | NT | NA | noncoding (5/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487136 | NA (NA) | noncoding (20/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ATAACACCCTGACCTCTCATTAATTGCTCATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3487086‑3487121‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCA < CP009273/3487136‑3487095 | ATAACACCCTGACCTCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTA > 1:25020636/1‑68 ACACCCTGACCTCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTAATG > 1:28272871/1‑68 ACCCTGACCTCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGGCCGGCCTGAGCAATTAATGAG > 1:49970332/1‑68 CCCTGACCTCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGA > 1:14117042/1‑68 ACCTCTCATTAATTGCTCATGCCGGCCGACGATAGTGCCGTCCGGCATGAGCCATTAATGAGAGGTCA > 1:15912863/1‑68 | ATAACACCCTGACCTCTCATTAATTGCTCATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3487086‑3487121‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCA < CP009273/3487136‑3487095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |