| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556960 = | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (19/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4460278 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 244 total aligned reads displayed.
TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557033‑3556960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT < CP009273/4460278‑4460212 TGCGACGTTAACGTCTTATCTGGCCTACAAGACCATGCAAATTGAATATATTGCATAAACCACGTAGG < 1:9286194/68‑1TGCGACGTGTACGTCTTATCTGGCCTTCAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:42969943/68‑1TGCGACGTGAACGTCTTATCTGTCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:2978657/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAATTTCAATATATTGCATAAACCACGTAGG < 1:17130905/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATGTTGCATAAACCACGTAGG < 1:25168343/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:50801249/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:19728931/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:7562004/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:20944584/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:7179789/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:10688361/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:22709161/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:32179264/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:12472648/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:24673470/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:26477931/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:26800013/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:48913028/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:27844358/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:28627708/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:18525332/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:37230634/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:37720823/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:45452557/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:16341490/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:41404998/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:40735560/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:8513646/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:38804958/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:39601733/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:40611921/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:13829686/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGG < 1:1371443/68‑1TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAACTCAATATATTGCATAAACCACGTAGG < 1:23297801/68‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:46234107/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:29000803/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:38289632/67‑1 GACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCC < 1:32199929/67‑1 ACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTG > 1:4943248/1‑68 ACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTG > 1:15698982/1‑68 CGTGACCGTCTTATCTGGCCTACAACACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:50147979/68‑1 CGTGAACGTCTTATCTGGCCTACATGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:9545685/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:17989731/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:44017760/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:43690531/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:43034973/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:41497238/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:11780277/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:12814119/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:14782379/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:15421572/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:15958853/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:17478970/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:50000735/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:37651742/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:37407892/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:2732187/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:27136870/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:5795079/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:18211999/68‑1 CGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGA < 1:32933427/68‑1 GTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGAT > 1:35694139/1‑68 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGAT > 1:40339490/1‑55 AAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTAC > 1:36810604/1‑68 ACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTG > 1:32471881/1‑68 ACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTG > 1:44919822/1‑68 TAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGGAATTTATTGAATTTGTTGGCCGGAT > 1:47907451/1‑68 GCCTGATGCGCTACGCTTCTCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG > 1:39754352/1‑68 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG < 1:45306831/68‑1 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG > 1:46603403/1‑68 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAG > 1:20132211/1‑68 cttATGCGATACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGTCCGGATAAGG < 1:42337232/64‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:6559650/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:47143010/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:8738763/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:5985718/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:33965248/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:37938889/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:15447675/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:20444240/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:21261706/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:34277796/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:21920916/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:30788613/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:30329248/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:29576178/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:25753927/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:22389994/67‑1 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGG < 1:24425123/67‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:11067284/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:11339429/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:23886442/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:50525593/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:36239616/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:45866122/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCA < 1:39128177/68‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGATGGCCGGATAAGGCA < 1:31704614/68‑1 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:34350313/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT > 1:41142716/1‑68 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATT < 1:1305150/67‑1 TGCGACGTGAACGTCTTATCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557033‑3556960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTT < CP009273/4460278‑4460212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |