| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 505 (0.820) | 31 (0.060) | 10/88 | NT | 7.4% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 381 (0.780) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 259 total aligned reads displayed.
AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCT < 1:34163733/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCCTCCATTACGTTTTACTCTGTC < 1:43496124/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:33421016/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:34411761/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:7721335/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:5340741/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:29240137/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:13426877/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:14260731/68‑1 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTTTCA > 1:37854516/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:33785119/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:25586943/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:16714900/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:17594610/1‑68 ATAAAGCCATTAGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:21694566/1‑68 AAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAG > 1:44492568/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:50422054/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:19142978/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:36631896/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:35630645/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:27237967/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:17491784/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:11125494/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:48852799/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACCTTTTACTCTGTCACCCc > 1:28862465/1‑66 GCCATTTGGTTTCAATATTATGCAAAATCGCACAACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:40088393/1‑67 CCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC > 1:28681797/1‑67 CATTTGGTTTCAATATTATGCAAATTCGCACCACAGTCATCAATTACGTTTTACTCTGTCAGCCGCC < 1:24505065/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:2381351/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:51038150/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:26085822/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:15718762/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:2009695/66‑1 TTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCgca < 1:47272723/68‑4 CCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCGAATGTACGTAGAATGCCCGCAAGGGCGGC < 1:45392184/68‑1 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGCCGTAGAATGCCCGCAAGGGCGGCTGACAGAGT > 1:3636679/1‑68 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGGTGACAGAGT > 1:37479970/1‑68 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGT > 1:41346724/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:37530007/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:18480178/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAATACGT > 1:23461973/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGg > 1:1661274/1‑67 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:9788687/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:831030/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:6228522/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:43820800/1‑68 GTTTTACTCTGTCAGCCGGCCGAATCGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAATACGTA > 1:27297722/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:27586854/1‑68 ACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCCCAAGGGCGGCTGACAGAGTAAGACGGAATGGA > 1:18219654/1‑68 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:44238616/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:4956689/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:30805091/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:38266241/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:11424023/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:21931006/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:26586931/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:27117809/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:31267495/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:1637291/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:4061526/68‑1 TCAGCCGCCCGAATGGCCGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:42808522/1‑64 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:34014686/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:26905584/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:31652899/68‑1 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:11921128/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:12701592/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:50093408/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:46580019/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:4502880/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:10455581/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:20793398/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:21011845/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:39942048/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:24303749/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:46134466/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:1537791/1‑68 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:1958785/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:32712178/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:909032/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:10702422/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTG < 1:21277385/65‑1 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:16088836/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:10105304/1‑68 CCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCG > 1:2140608/1‑68 CCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGA > 1:14853302/1‑68 CCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGA < 1:29024439/68‑1 CCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCG < 1:1299430/67‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:18791527/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:4681247/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:37807339/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:3305072/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:7168962/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:6770635/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:6303329/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:13755817/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:49746140/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:49490495/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:15257267/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:47665424/68‑1 CGAATGGACGTAGAATGCCCGCAAGGCCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:22187406/68‑1 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |