| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4615686 = | 739 (1.190) | 5 (0.010) | 3/98 | NT | 0.77% | intergenic (+6/‑43) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein |
| ? | CP009273 | 4615706 = | 637 (1.180) | intergenic (+26/‑23) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4615758‑4615686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > CP009273/4615706‑4615770 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:958551/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:32061583/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:22797384/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:36847166/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:37341973/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:38721836/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:38786354/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:40046260/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:41336195/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:15990583/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:10844266/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:7839055/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:47480559/1‑68AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGCACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:37947293/1‑68AACAAAGGAGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGTATGGC > 1:33440204/1‑68 ACAACGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG < 1:7389829/68‑1 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:48631707/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:4958741/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG < 1:501548/68‑1 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:37458822/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:3083837/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:42337118/1‑68 CAAAGGCGCGTTTTGGAGCTTTTTCCACGGTGTACCTAGTTAATGCTGTGCCGCACGCAGGATGGCGG > 1:21494698/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:26802164/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:30097843/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:31950255/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:1029051/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:34619240/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:36887681/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:44166483/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:46970894/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:15885533/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:18574124/1‑68 AAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGG < 1:45894668/68‑1 AAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGG < 1:3494874/68‑1 AAAGGCGCGTTTTGGAGCGTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGG < 1:13792769/68‑1 AAAGGCGCGATTTGGAGCTGTTGCCACGGTGTACCTCGTTAATGCTGGGCCGCCCGCAGGATGGCGGG < 1:24141182/68‑1 accGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTCTGCAGCCCGCAGGATGGCGGGC > 1:12162085/4‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:14253938/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:41108635/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:21222390/1‑68 GGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCGc > 1:42174057/1‑67 CGCGTTTTGCAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCGGC < 1:27548829/67‑1 TTTTGCCCCGGTGACCCTCGTTAATGCTGTCCCGCCCGCCGGAGGGCGGGCGGCACAGCATTAACGAG < 1:34484807/68‑1 TTTTGCCACGGTGTACCTCGTTAATGCGGGGCCGCCCGCAGGATGGCGGGCGGCACAGCATTAACGA < 1:477410/67‑1 TTTTGCCACGGTGTACCTCGTAAATCCTGTGCCGCCCCCAGGAGGGCGGGCGGCACAGCATTAACGAG < 1:36124544/68‑1 TTTTGCCACGGTGACCCTCGTAAATGCTGGGCCGCCCCCAGGAGGGCGGGCGGCACAGCATTAACGA < 1:36796566/67‑1 TTGCCACGGTGTCCCTCGTTACTGCTGGGCCGCCCGCAGGATGGCGGGCGGCACAGCATTAACGAGGT < 1:6069194/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA > 1:23625782/1‑68 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:34717956/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA > 1:13536874/1‑68 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:44181034/68‑1 GGGCGGCACAGCATTAATGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:29668721/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:25290530/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:1025881/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:43657742/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:18333629/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:45947884/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:45999019/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:17445673/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:48349069/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:29547348/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:2885470/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:5590435/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:7830506/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:33230784/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:31805875/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:40091110/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:2106378/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:24471353/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:21224052/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:36817355/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:36706131/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:21801909/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTGTGTGGTAATGAAT > 1:46699478/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTCGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:19965506/1‑68 GGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:21882397/1‑67 GGCGGCACAGCATTAACGAGGTACACCCAGGCAAAAGCACCAAAACGCGCCTTAGTTTGTAATGAAa > 1:437372/1‑66 GCGGCACAGCATTACCGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:36986599/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:22451663/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:23071619/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:36102124/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:13235136/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:7599367/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:32811097/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:25986932/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:49115492/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:48137648/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:37101619/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:21574427/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:21484832/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:38149579/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:2980210/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:24721491/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:41568668/1‑68 GCGGCACAGCATTAACGAGGTACACCGTCGCAAAACCTCCAAACCGCGGCTTTCTTTGTAATCAATGa > 1:49742257/1‑67 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4615758‑4615686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > CP009273/4615706‑4615770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |