| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 438477 | NA (NA) | 12 (0.020) | 8/88 | NT | NA | noncoding (4/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 438479 | NA (NA) | noncoding (6/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 211 total aligned reads displayed.
CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438401‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:51116820/1‑68CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:3972111/1‑68 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:31832030/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:35980080/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:22458906/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:46669313/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:36101610/67‑1 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:6846721/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:6307882/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:32832841/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:50926963/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:25510050/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:17712590/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:43829496/1‑68 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTATACGTC > 1:17228417/1‑68 TCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:25185612/1‑67 TCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:36873406/1‑67 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGTTTTTTACGTCGCA < 1:36945162/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:38372642/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:10898337/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:6157390/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:49368343/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:47561157/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:46306680/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:26846857/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:1481462/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:2021061/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:45451614/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:26249032/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:18992814/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:31643198/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:16158172/68‑1 tTCTGGGCGAGAAGGGCTTTAACAATGTGAATGTATTTCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:19428566/66‑1 ATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:16715579/1‑67 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:34761924/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:38925689/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:9839417/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:43562386/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:30849476/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:29640153/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:28488939/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:1344765/1‑66 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:1801141/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:20890240/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:22675175/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:33804512/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:6464514/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:40181514/1‑65 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:9187918/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:47138293/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:47751272/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:26786413/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:29730336/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:35131345/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:40667746/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:12870307/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG < 1:11758435/68‑1 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:9427111/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:33604329/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:9287634/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:4092987/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGAATCTG > 1:45818170/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCAGTAATTTGTGGTTTTTACGTAGCATCTG > 1:15646819/1‑68 CGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTAAGTCGCATCTGACCA > 1:33049919/1‑68 CTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGCCCAGATGCGACG > 1:16891939/1‑68 AACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAA > 1:1014294/1‑68 TATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTAC > 1:36267926/1‑68 ATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGG > 1:13631304/1‑67 ATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGG > 1:31384497/1‑67 TCGCCCGTAATTTGTCGTTTTTACGTCGCATCTGCACAGAACCGACGTAAAAACCACAAATTACGGGC < 1:253484/68‑1 CGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCG > 1:43392501/1‑68 GGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACAT > 1:49739569/1‑68 TTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTT < 1:29270580/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAATCCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:33904601/1‑67 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:45234448/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:12610015/1‑67 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG > 1:50631680/1‑67 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG > 1:21688160/1‑67 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG > 1:21630421/1‑67 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC < 1:27199863/68‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:2334906/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATT < 1:30525405/55‑1 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCT < 1:14093503/68‑1 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:21339518/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:10591793/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:5641149/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:41842122/1‑67 TCTGACAAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCT < 1:1395855/68‑1 TGACCAGATGCGACTTAAAAACCACAAATTACGGGCGATATTCCTTCACATTGTTAAAGCCCTGCTCG < 1:26421687/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCTCATTGTTAAAGCCCTGCTCG < 1:20088850/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTTAAGCCCTGCTCG < 1:20321435/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:4248283/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:26608448/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:23894479/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:10823309/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:41230098/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:34323276/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:4859028/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:39169871/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTC > 1:43938010/1‑67 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438401‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |