| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 699831 = | 495 (0.800) | 33 (0.060) | 6/96 | NT | 7.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 343 (0.650) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
Only 100 of 169 total aligned reads displayed.
AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/699903‑699831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC > CP009273/699861‑699927 AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATG > 1:12079607/1‑67AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATG > 1:40350058/1‑67 AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:13674136/1‑68 AACTATCCACTCGCCGCCTGCATGGATACCGTGCGGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:31462279/68‑1 AACGCTCCACTCGCCGCCTGCATGGATAGCGGGCGGTACCGGCGGCCAGACGTAACCAAAACTGGCCG < 1:32501884/68‑1 AACGCTCCACACGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:17603034/68‑1 AACGATCCAGCCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:49946903/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGGTGTACGGGCGGCCAGACGTAACCAAAAATGGCCG < 1:41645125/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCATACGTAACCAAAAATGGCCG < 1:7202289/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:23249545/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:46348312/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:4605513/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:45189187/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:44838985/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:40970867/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:43967658/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:39209084/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:41993811/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:41402973/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:27427994/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:32331844/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:10010197/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:35796778/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:35166604/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:38077375/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:38395355/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:14192475/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:14774809/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:15033919/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:6192463/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:16569021/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:32881266/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:5800153/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:49214155/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:4093367/1‑67 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGC < 1:48471333/66‑1 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:30835287/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:24042400/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:9374943/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:26186688/1‑67 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:39957512/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:38771728/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:16805038/68‑1 GATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCG < 1:26079413/68‑1 TCCACTCGCCGCCTGCCGGGATACCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:40691055/68‑1 TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:1867062/68‑1 CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:11329379/68‑1 CGCCGCCGGCATGGATAGCGTGCTGTCCCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCA < 1:7791218/68‑1 CGCCCCCTGCATGGATCGCGCGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:39032568/68‑1 GCCGCCTGCATGGATAGCGTGCGGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:43475442/68‑1 GCCGCCTGCATGGATAGCGGGCGGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:19429437/68‑1 GCCGCCGCCATGGAAAGCGTGCTGAACCGGCGGCCAGACGAACCCAAAAATGGCCGCCGGTACAGCAC < 1:37044/68‑1 CCGCCTCCATGGATACCGGGCTGTACCGGCGGCCAGACGAACCCAAAAATGGCCGCCGGTACAGCACG < 1:48882184/68‑1 CGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACG < 1:12451214/67‑1 CGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACG < 1:35885512/67‑1 GCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:10561282/68‑1 GCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:28331037/68‑1 GCCTGCAGGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:44308628/68‑1 CTGCTTGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTA < 1:32215218/67‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGCCGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:24365989/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTACCCAAAAAAGGCCGCCGGTACAGCACGCTAT < 1:27255412/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:3459487/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:214647/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:33135057/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTA < 1:20598456/67‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTA < 1:33944859/67‑1 CTGCATGGATAGCGTCCTGAACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:21931051/68‑1 CTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:21807266/68‑1 GGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCC < 1:15862061/68‑1 GGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCC < 1:25204510/68‑1 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:6243389/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:23089952/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:7753480/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:3737214/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:2855142/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:39504576/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:2870161/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:2928328/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:40188592/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:29813344/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCG < 1:13019917/67‑1 CCGCCGGTACAGCACGCTATACATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:20362254/1‑68 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT < 1:30151838/68‑1 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT > 1:7134128/1‑68 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT < 1:18349693/68‑1 CGCCAGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT < 1:16459870/68‑1 GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA < 1:42279576/68‑1 GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA < 1:22570444/68‑1 CCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA > 1:51122058/1‑67 CGGTACAGCACGCTATCGATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:8361107/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:21134996/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:8402397/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:24448516/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:11601822/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:26288385/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:34089326/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:39970301/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:46367794/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:40784130/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:42118887/67‑1 AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/699903‑699831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC > CP009273/699861‑699927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |