New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1092557NA (NA)15 (0.030)
+GC		 6/108 NT NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 = 1092559 NA (NA)intergenic (+274/+462) ycdU/serX putative inner membrane protein/tRNA‑Ser

CACTGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092530‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  CP009273/1092559‑1092498
                            ||                                                              
CACTGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGA                                                    >  1:14050319/1‑42
   TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCCGTGAGCGGGCTGC                        >  1:11054595/1‑67
   TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGC                        >  1:16061604/1‑67
     CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGGCAGACCGTGAACGCAGTGAGCGGGCTGCCC                      >  1:539527/1‑67
     CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGCCC                      >  1:27288180/1‑67
         CACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCCGTGAGCGGGCTGCCCGCCGG                 >  1:30844216/1‑68
         CACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGG                 >  1:14765045/1‑68
           CGGTCTGTCCAACTGGGGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:45743917/1‑68
           CGGTCTGTCCAACTGGCGCCAGCCAGTTGGGCAGCCCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:38987842/1‑68
           CGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:39444878/1‑68
           CGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:41296236/1‑68
           CGGTCTGTCCAACGGGCGCCAGCCAGTTGGACAGACCGTGCACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:39505873/1‑68
              TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA             >  1:29510781/1‑67
                  gaCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAA        <  1:36266315/66‑1
                   aCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGCGCGAA        >  1:27519307/2‑67
                        TGGCGCCAGCCAGTTGGACAGACCGTGAACGCCGGGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  1:12763963/68‑1
                        TGGCGCCAGCCAGTATTACAGACCGTGAACCATGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  1:8440636/68‑1
                            ||                                                              
CACTGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092530‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  CP009273/1092559‑1092498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.