| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 13 (0.030) | 4/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 415 total aligned reads displayed.
TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1111156‑1111080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111111‑1111177 TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGC < 1:22908339/68‑1TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGC < 1:10995669/68‑1TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGC < 1:35916468/68‑1 AACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG < 1:16868964/68‑1 AACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG < 1:16199250/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:40302905/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:22303526/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:34987371/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:14213554/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:17164746/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:37854046/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:31651535/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:20666965/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:19764841/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:3237502/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:41269626/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:46451656/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:6496814/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:25528759/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:44431891/1‑67 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA > 1:41672373/1‑68 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:41020854/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:6962226/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:28486493/68‑1 AGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGAT < 1:48066059/67‑1 CCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCACAATGCCAGCCGGCATGGGAGATTTAATAGC < 1:33121231/68‑1 CTTCACGCTATTAAATCTCCCACCCCGGACCCTTCAGAACGGCATCCGGCATGGGAGATTAAATAGC < 1:41420224/67‑1 ATCCGGCATGGGAGATTTAATGGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:29264599/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:49581775/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:37565539/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:26558492/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:44250583/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAA < 1:26687738/67‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA < 1:36836737/66‑1 cctGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACTGTGTAACCA < 1:10037431/65‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACaa < 1:5934646/68‑3 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:40796191/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:42973344/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:33812871/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:43177554/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:393014/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:50605461/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:9686419/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:9457324/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:8303432/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:7641165/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:7263811/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6216269/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6078556/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:51266828/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:43546993/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:50235049/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:48961706/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:48684218/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:48446219/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:47929644/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:45851535/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:45112530/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:44023521/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:38174634/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:10888710/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:11405657/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:12485126/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:12648995/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:12838477/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:13547236/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:13875007/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:14701529/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:1515036/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:1791600/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:21828327/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:22524866/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:23551883/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:24594712/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:34227284/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:27267267/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:27410174/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:29075721/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:32235919/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:31391975/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:30011350/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:31223273/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:30324846/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:3074505/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACC > 1:42858736/1‑67 CCGGCATGGGAGATTTAAAAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:36392170/68‑1 CCGGCAGGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGGGTAACCA < 1:49369007/68‑1 CATGGGAGATTTAATGGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:16310703/67‑1 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATA > 1:38465145/1‑68 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:10556366/67‑1 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:186799/67‑1 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:19289750/67‑1 ATGGGAGATTTAATAGCGTGAAGGACCGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:23811585/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:15932412/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:46942823/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:1175595/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:8959402/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:9146620/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > 1:24249482/1‑68 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:25762041/68‑1 TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1111156‑1111080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111111‑1111177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |