New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581315 (0.510)18 (0.030)
+A		 6/110 NT 5.9% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 265 (0.430)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161518‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACA  >  CP009273/1162078‑1162111
                                                                |                                  
TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCG                                 >  1:40595646/1‑68
     AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGG                            >  1:23012773/1‑68
             GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGA                      >  1:609734/1‑66
             GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGA                      >  1:40100730/1‑66
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTGCGGGTGTTGAAat                   >  1:24143804/1‑66
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTACGGGTGTAGAAa                    >  1:30894679/1‑66
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGAAa                    >  1:15502676/1‑66
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGAAC                    >  1:14957585/1‑67
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGGGTAGAAC                    >  1:15818228/1‑67
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCGGGTGTAGAAa                    >  1:21122867/1‑66
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACTGGTGTAGAAC                    >  1:39384721/1‑67
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAAat                   >  1:28985885/1‑66
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAAC                    >  1:3649579/1‑67
              GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGGGTAGA                      >  1:35586816/1‑65
                          ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTAGGGGGCTAGAAATCTCCGCAGAAat       >  1:29881326/1‑66
                          ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCTGGTGTAGAAATCTCAGCTCAATT       >  1:19123111/1‑68
                            TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGAGGGGTCTAGAAATCTCCGCTCAGTTGC     >  1:29441343/1‑68
                            TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGG                             >  1:8013307/1‑44
                                CCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACA  >  1:34443544/1‑67
                                                                |                                  
TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161518‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACA  >  CP009273/1162078‑1162111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.