| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 315 (0.510) | 36 (0.060) +G |
14/110 | NT | 11.2% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 265 (0.430) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161523‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCA > CP009273/1162078‑1162124 | AAATTTAAGGGGGTCACGTTGACTACGCCATTGAATAAGATTGTGATTGTCGGCGGCGGGGCGGCGGG > 1:11981501/1‑68AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGG > 1:30669495/1‑68AAATTTAAGGGGGTCACGGTGACTACGCCATTGAAAAAGATTGCGATTGTCGGCGGCGGCGCGACGGG < 1:2815958/68‑1 AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAACATTGCGATTGTCGGCGGCGGCGCGACGGGT < 1:39968960/68‑1 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGA > 1:38474154/1‑66 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGGCTGGTGTTGAAa > 1:12227907/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTGCGGGGGTAGAAa > 1:24972183/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTGCGGGGGTAGAAC > 1:3261592/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTACGGGTGTTGAAC > 1:3320615/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGGCTAGAAag > 1:5620771/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCGGGGTGTAGAAat > 1:18283084/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAAC > 1:44645739/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGCCGGGGGTAGAAat > 1:31874045/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGGGTAGA > 1:33509286/1‑65 gcGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAAC < 1:7080991/64‑1 GTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACatg > 1:17155653/1‑64 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAATCTCCGCTG > 1:36614404/1‑68 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAATCTCAGCT > 1:3218080/1‑67 GACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTCAAT > 1:50740716/1‑68 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGAACTCTCCGCTGAATT > 1:49217377/1‑68 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAAATCTCCGCAGAAat > 1:23540401/1‑66 TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGAGGGGTGTAGAAATCGCCGCTGAAATGC > 1:35814333/1‑68 TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGC > 1:31408857/1‑68 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGAACTCTCCACTCAAGTGCTCAA > 1:13655154/1‑68 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCGGGGTGTTGAAATCGCCGCTGAACTGCACA > 1:30320767/1‑67 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACA > 1:11966225/1‑67 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCA > 1:8621961/1‑65 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGA > 1:12982202/1‑47 CATTGAAAAAGATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAC < 1:28874036/68‑1 aTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCC < 1:11053044/50‑1 AAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCA < 1:7606539/68‑1 AAGATTGTGATTGTCGGCGGCGGCGCGTCGGGTGTAGAAATCTCCGCTCAATTGCACAACGCGCTCAA > 1:30055951/1‑68 AGATTGTGATTGTCGGCGGCGGGGCTACGGGTGTAGAAATCTCCGCTCAAGTGCACAAAGCGCTCAA > 1:34622926/1‑67 AGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTTGAACTCTCCGCTGAATTGCGCAACGCGGTCAA > 1:13981647/1‑67 AGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAA > 1:14498399/1‑67 ATTGTGATTGTCGGCGGCGGCGCGACGGGGGTAGAACTCTCCGCTGAATTGCACAACTCGGTCAGGCA > 1:10466896/1‑68 | AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161523‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCA > CP009273/1162078‑1162124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |