BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2974100	NA (NA)	12 (0.020)	6/90	NT	NA	noncoding (9/23 nt)	REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	CP009273	= 2974105	NA (NA)	12 (0.020)	6/90	NT	NA	noncoding (14/23 nt)	REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 294 total aligned reads displayed.

CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2974023‑2974100

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT  <  CP009273/2974105‑2974039

CAAGGCTGAATAAGGAACGAGACAAACGCCTCACCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAG                                                                               >  1:11200308/1‑68

CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGTCCAAGTGCCCAATCTCTATTAACGAAAAAAG                                                                               >  1:16145457/1‑68

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:10135436/1‑68

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:39294694/1‑68

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:2752163/1‑68

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:21376488/1‑68

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              <  1:48946110/68‑1

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              <  1:28473816/68‑1

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:15174552/1‑68

 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGACAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:48033984/1‑68

  AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG                                                                             <  1:25444068/68‑1

  AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG                                                                             <  1:17179702/68‑1

  AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG                                                                             <  1:34234876/68‑1

  AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG                                                                              >  1:4739773/1‑67

   GGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG                                                                             >  1:36197965/1‑67

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTTACGAAAAAATGGCC                                                                           >  1:26863450/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:29812218/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:37844148/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:19456277/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:20615511/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:40898169/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:22435487/1‑68

    GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:43494990/1‑68

    GCTGAATAAGGAACGAAACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC                                                                           >  1:47010557/1‑68

     CTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGC                                                                            <  1:24920718/66‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGG                                                                         >  1:41723466/1‑68

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:42845892/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:3945670/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:26996467/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:35319727/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:30745024/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:3862197/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:2214501/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:5841387/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:7589914/67‑1

      TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG                                                                          <  1:12840827/67‑1

       GAATAAGGAACGATACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:36087561/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:3656414/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:33517229/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:9264264/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:3434742/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:8461989/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:6925834/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:40393888/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:37036563/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:51158307/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:47861617/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:46332818/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:9837244/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:42616141/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:24687881/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:21160122/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:23170338/68‑1

       GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA                                                                        <  1:13293401/68‑1

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG                                                                      >  1:4645482/1‑68

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG                                                                      >  1:34719610/1‑68

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT                                                                       <  1:29644373/67‑1

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT                                                                       <  1:25715898/67‑1

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT                                                                       <  1:14355883/67‑1

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT                                                                       <  1:31658105/67‑1

         ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT                                                                       <  1:45986145/67‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGGCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:49440033/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:15650219/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:32963585/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:19092961/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:18693019/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     >  1:4832156/1‑68

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:24173791/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:22261938/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:50811467/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:27987203/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     >  1:29948607/1‑68

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:12228256/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:11844937/68‑1

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     >  1:11452940/1‑68

          TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:1129280/68‑1

          TAAGGAACGAGACAAACACCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:41538001/68‑1

           AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     >  1:37238427/1‑67

           AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     >  1:35881382/1‑67

           AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACCAAAAAAGGGCCGGATGT                                                                     >  1:38132106/1‑67

                          CGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGTGGTGCTGTGCCTCCGGggc                                                     >  1:23018282/1‑65

                           GCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT                                                                     <  1:27696400/51‑1

                             CTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT                                                                       <  1:4925264/47‑1

                                   GGCCAAGTGCCCAATCTGTATTTACGAAAAAAGGGCCGGATGTGCTGTACATCCGGGGCTGTTTTCGT                                            >  1:28731736/1‑68

                                                      ATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTT                         >  1:31964177/1‑68

                                                                   GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG            <  1:19254682/68‑1

                                                                   GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG            <  1:43865356/68‑1

                                                                   GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG            <  1:39797376/68‑1

                                                                   GGGCCGGATGTGCTGTACATCCGGCCCTCTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG            <  1:31293635/68‑1

                                                                      CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT          <  1:44239330/67‑1

                                                                        GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT       <  1:33604536/68‑1

                                                                        GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT       <  1:32439860/68‑1

                                                                        GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT       <  1:42151949/68‑1

                                                                        GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT       <  1:2334074/68‑1

                                                                        GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT       <  1:44931860/68‑1

                                                                           TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC    >  1:24442203/1‑68

                                                                           TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC    >  1:2624209/1‑68

                                                                           TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC    >  1:17590941/1‑68

                                                                           TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC    >  1:4529147/1‑68

                                                                            GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG   <  1:47725632/68‑1

CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2974023‑2974100

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT  <  CP009273/2974105‑2974039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.