| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 490 (0.790) | 32 (0.060) | 14/96 | NT | 6.8% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 459 (0.860) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 1144 total aligned reads displayed.
TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 | tgcatggagttaaagtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCggg < 1:20199089‑M1/8‑1 (MQ=255)tgcatggagttaaagtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCggg < 1:36655306‑M1/8‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:23668346‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:17724567‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:41624773‑M1/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:12356690/68‑1 (MQ=255) gTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggat < 1:47843424/68‑1 (MQ=255) tCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatg > 1:39167035/1‑68 (MQ=255) tCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatc > 1:1080385/1‑67 (MQ=255) cAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgg < 1:24048820/68‑1 (MQ=255) cAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatg < 1:46159133/67‑1 (MQ=255) aaCTAAACCGGCTCTGCCACCAGTTCGATGGATAACATGCTGGAACAGCAGCTGGCAGGCGggatgga < 1:34945511/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:49856003/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:6745979/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:34408011/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:19077636/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:1112273/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:51115844/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:1532127/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:4413984/68‑1 (MQ=255) aaCCGGCTCTGACTCCAGTTCGATGGATAACCAGCTGGAACTGCTGCAGGCAGGCGGGATGGATatca < 1:36115983/68‑1 (MQ=255) aaCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatca < 1:16340015/68‑1 (MQ=255) tGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGcc < 1:32198035/67‑1 (MQ=255) gACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt < 1:19469156/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCCGGCGGGtggtactaatagtcgcatggc > 1:35600006‑M1/1‑46 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:29007284/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc > 1:21455315/1‑68 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:9403478/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:14490174/68‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:10100042/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:7230301/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:6534576/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:50792827/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:46457635/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:39425745/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:3700310/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:31683670/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:20759874/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:42687998/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:40031690/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:2294692/67‑1 (MQ=255) cGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTa < 1:40756903/68‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:24525830/68‑1 (MQ=255) ggATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTa > 1:17187829/1‑67 (MQ=255) aTAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTacc > 1:28228150/1‑67 (MQ=255) aTAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTacc > 1:27422022/1‑67 (MQ=255) aTAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTacc > 1:41260075/1‑67 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:22360066‑M2/68‑4 (MQ=255) aTGCTGGAACTGCTGCTGGCCGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccg > 1:1138692‑M1/1‑27 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:5423600‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:18670193‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:45084417‑M2/67‑5 (MQ=255) tccgggttgttctgcCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTg < 1:43788282‑M1/52‑1 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:16027244‑M2/1‑59 (MQ=255) ggAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGc > 1:28673633‑M2/1‑67 (MQ=255) aCTGCTGCTGGCAGGCGGGtggtaataatagacgcatggcgccgatgatatccataccgcctgccagc > 1:29486340‑M1/1‑19 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa < 1:26183678/68‑1 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:44863282/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:16864330/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:8772020/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:9099814/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:3116288/1‑68 (MQ=255) ctgctgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:38826970/1‑67 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:47324439/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:8319915/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:28002334/68‑1 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCCCCCGCCTGGCAGaacaac > 1:2659511/1‑67 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:30144453/68‑1 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:37300355/68‑1 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:38017660/68‑1 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCg < 1:24754459/68‑1 (MQ=255) ggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCgg < 1:48311170/68‑1 (MQ=255) ggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCgg < 1:5801387/68‑1 (MQ=255) gCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:13208459‑M1/1‑9 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAGCCCGGa > 1:33861181/1‑68 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:24970343‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:15780482‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:7527887‑M1/1‑8 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcagcagcagttcca < 1:4572369‑M2/67‑15 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:13610993‑M1/68‑1 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:2344370‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:14001879‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:19805317‑M1/1‑67 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:32718244‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:50410022‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagca < 1:40443560‑M1/66‑63 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTCCCAcccgcctgccagcagcagttccagca > 1:30705145‑M2/1‑40 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGAACCAcccgcctgccagcagcagttccagcat > 1:49031065‑M2/1‑40 (MQ=255) cGGGAGGGATATCATCCGCGCCATGCGTCAAATAGTACCAcccgcctgccagcagcagttccagcat > 1:25569670‑M2/1‑40 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:21075537‑M1/68‑66 (MQ=255) gggATGGATATCATCCGCGCCATGCGGCTATTAGTACCACCCccctgccagcagcagttccagcatgt > 1:33167563‑M2/1‑42 (MQ=255) GGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg > 1:27090887‑M1/1‑67 (MQ=255) ggatggatAACATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgt > 1:10366302‑M2/1‑38 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:18176325‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:43363075‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:21719413‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:42389971‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:38494388‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:7940163‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:20385479‑M1/1‑67 (MQ=255) | TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |