New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3851553 =624 (1.010)46 (0.100) 13/86 NT 10.5% coding (212/1494 nt) yidJ sulfatase/phosphatase superfamily protein
?CP009273 3851602 = 301 (0.630)coding (163/1494 nt) yidJ sulfatase/phosphatase superfamily protein

Only 100 of 1329 total aligned reads displayed.

ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGA  >  CP009273/3851486‑3851620
                                                                   |                                                                   
gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggttagtccgcctgc                                                                     <  1:20465030‑M1/1‑1 (MQ=255)
 tAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCC                                                                     >  1:5269740‑M1/1‑67 (MQ=255)
 tAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCC                                                                     >  1:1699935‑M1/1‑67 (MQ=255)
  tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc                                                                   <  1:29307753‑M1/3‑1 (MQ=255)
  tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc                                                                   <  1:32908508‑M1/3‑1 (MQ=255)
  tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggttagtacgcctgCAc                                                                   <  1:35065444‑M1/3‑1 (MQ=255)
  tagtctggcggcggaaggtattcgcttaaattccgcctacacctgttcaccggtttgtacgcctgCAc                                                                   <  1:47384534‑M1/3‑1 (MQ=255)
  aGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCAC                                                                   >  1:10084773‑M1/1‑68 (MQ=255)
  aGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCAC                                                                   >  1:30938882‑M1/1‑68 (MQ=255)
  aGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGAGACGTTGTTGGTCCAC                                                                   >  1:14742540‑M1/1‑68 (MQ=255)
   gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACG                                                                  >  1:39097618‑M1/1‑68 (MQ=255)
   agtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg                                                                  <  1:6081719‑M1/4‑1 (MQ=255)
   agtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg                                                                  <  1:18452583‑M1/4‑1 (MQ=255)
   agtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg                                                                  <  1:9180425‑M1/4‑1 (MQ=255)
   agtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg                                                                  <  1:34713574‑M1/4‑1 (MQ=255)
    ccGGCATCCTTAAAGTAGCGCCCCATAGTGGATATGGTTTTTACTGGCGCGACGTTGTTGGTCCACGG                                                                 >  1:45584907‑M1/1‑68 (MQ=255)
     tctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg                                                                 <  1:39547884‑M1/5‑1 (MQ=255)
     cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGG                                                                <  1:26302246‑M1/68‑1 (MQ=255)
     cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 <  1:8541455‑M1/67‑1 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:44370825‑M1/62‑67 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:41844849‑M1/62‑67 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:8929297‑M1/62‑67 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg                                                                 >  1:4115157‑M1/62‑66 (MQ=255)
         aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG                                                            <  1:42786454‑M1/68‑1 (MQ=255)
         aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG                                                            <  1:38521084‑M1/68‑1 (MQ=255)
           ggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            <  1:43079152‑M1/10‑1 (MQ=255)
           ggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            <  1:50715309‑M1/10‑1 (MQ=255)
             ttAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTg                                                        <  1:39958901/68‑1 (MQ=255)
             cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt                                                         >  1:24984410‑M1/55‑67 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:28212381/68‑1 (MQ=255)
                 aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:33673005/1‑68 (MQ=255)
                 aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:43963532/1‑68 (MQ=255)
                 aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:49104447/1‑68 (MQ=255)
                  gTAGCGCCCCATTGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGAGTGGTTAg                                                   >  1:46241048/1‑68 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTTTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:24499990/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:37508825/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:38796746/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:23970664/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:28534369/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:15542032/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCAGGACTGGTTa                                                    >  1:19377653/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGATGGTCCACGCGCCGGACTtttta                                                    >  1:45056406‑M1/1‑62 (MQ=255)
                  gTAGCGCCCAATAGTGGAGATGTTTTTGCCTGTCGCGACGTTTTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:2205462/1‑67 (MQ=255)
                    aGCGCCCCATAGTGGAGTTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg                                                   <  1:6489429/66‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc                                                  <  1:30034557/67‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc                                                  <  1:50037954/67‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc                                                  <  1:46850876/67‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc                                                  <  1:49712745/67‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg                                                 <  1:19843125/68‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg                                                 <  1:32056514/68‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg                                                 >  1:17414270/1‑68 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg                                                 <  1:30578001/68‑1 (MQ=255)
                     gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGt                                                <  1:42134856/68‑1 (MQ=255)
                         cccATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt                                            >  1:4860691/1‑68 (MQ=255)
                          ccATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATa                                           <  1:28927410/68‑1 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:26852554/68‑1 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         >  1:13937074/1‑68 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:7290196/68‑1 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:35378573/68‑1 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:48054122/68‑1 (MQ=255)
                              aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:7647484/68‑1 (MQ=255)
                              aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:33184338/68‑1 (MQ=255)
                              aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:29858042/68‑1 (MQ=255)
                              aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:15179976/68‑1 (MQ=255)
                              aGTGGAGATGTTGTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:14321502/68‑1 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGGCGGACTGGTTAGCCTAGATACCGGTaa                                    >  1:37047227/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:27211918/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:36184486/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:3592855/1‑68 (MQ=255)
                                   agaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAAt                                  >  1:40748337/1‑68 (MQ=255)
                                     cctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:22541678‑M1/31‑36 (MQ=255)
                                     aTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag                                >  1:9671047‑M2/1‑66 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag                                >  1:4153072‑M2/1‑65 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag                                >  1:38034409‑M2/1‑65 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag                                <  1:31442093‑M2/67‑3 (MQ=255)
                                      tGTTATTGCCTGGCGCTACGTTGTTGGGCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag                                >  1:44734508‑M2/1‑65 (MQ=255)
                                              ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccg                       <  1:10986014‑M2/68‑12 (MQ=255)
                                              ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccg                       <  1:27595836‑M2/68‑12 (MQ=255)
                                              ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGG‑AAATagtccggcccgt                      <  1:36545027‑M2/68‑13 (MQ=255)
                                               cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt                      >  1:23506694‑M2/1‑56 (MQ=255)
                                               cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt                      >  1:12641188‑M2/1‑56 (MQ=255)
                                                    gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                 <  1:45829736/68‑1 (MQ=255)
                                                    gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                 <  1:7016916/68‑1 (MQ=255)
                                                    gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                 <  1:16531484/68‑1 (MQ=255)
                                                    gcgACGTTGGTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                 <  1:20965799/68‑1 (MQ=255)
                                                      gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg               <  1:32339565/68‑1 (MQ=255)
                                                      gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg               <  1:23068231/68‑1 (MQ=255)
                                                      gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg               <  1:43455414/68‑1 (MQ=255)
                                                      gACGTGGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg               <  1:16005463/68‑1 (MQ=255)
                                                        cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt              <  1:34222055/67‑1 (MQ=255)
                                                            acgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa          <  1:11538164‑M1/60‑1 (MQ=255)
                                                             cgcctgCACGGGCCGGACGGGTTAGCGTAGATACCGGTAAATAGTCCGGGCCGTGCAGGCGTACaaa         <  1:21539110‑M1/61‑1 (MQ=255)
                                                              tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGTGTACAAAcc       >  1:25766918/1‑68 (MQ=255)
                                                              tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc       <  1:13351583/68‑1 (MQ=255)
                                                              tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc       >  1:10510085/1‑68 (MQ=255)
                                                               cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg      <  1:8092578‑M1/64‑1 (MQ=255)
                                                                 tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    >  1:18032587/1‑68 (MQ=255)
                                                                 tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    >  1:49366867/1‑68 (MQ=255)
                                                                 tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCCGGCAGGCGTACAAACCGGt    >  1:5683674/1‑68 (MQ=255)
                                                                   CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa  >  1:11951970‑M1/1‑68 (MQ=255)
                                                                   |                                                                   
ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGA  >  CP009273/3851486‑3851620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.