| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4512275 = | 526 (0.850) | 34 (0.070) | 14/92 | NT | 6.9% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 490 (0.960) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
Only 100 of 871 total aligned reads displayed.
TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA > CP009273/4512208‑4512342 | ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc < 1:21636662/68‑1 (MQ=255) tCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGcc < 1:17584432/68‑1 (MQ=255) aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc < 1:39016170‑M1/2‑1 (MQ=255) aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc < 1:2479623‑M1/2‑1 (MQ=255) aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc < 1:21249418‑M1/2‑1 (MQ=255) agaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc > 1:22029835‑M1/66‑67 (MQ=255) agaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCg < 1:27937330‑M1/3‑1 (MQ=255) gaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGa < 1:38382347‑M1/4‑1 (MQ=255) gaaacctaccaggttaccagtgccctgaagcagcggtcatacggtaagcatgtttcgttaatcaCCGa < 1:15513150‑M1/4‑1 (MQ=255) aTTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGAt < 1:6360191/68‑1 (MQ=255) ttAAATCCCCGGTGCGTAATTT‑CCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGc < 1:35872804/68‑1 (MQ=255) aacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGa > 1:49271210‑M1/63‑66 (MQ=255) aacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGAt > 1:12643264‑M1/63‑67 (MQ=255) acctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATg < 1:13157319‑M1/6‑1 (MQ=255) acctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc < 1:11432539‑M1/7‑1 (MQ=255) cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc < 1:7537677‑M1/7‑1 (MQ=255) cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc < 1:46414664‑M1/7‑1 (MQ=255) cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc < 1:41094881‑M1/7‑1 (MQ=255) aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAc > 1:28463914/1‑67 (MQ=255) aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAc > 1:46768900/1‑67 (MQ=255) ccccGGTGCGTAATTTACCGATTGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg < 1:33120763/68‑1 (MQ=255) ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCCCATGGCCGATGCAcgc > 1:27323051/1‑67 (MQ=255) ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg < 1:41518560/68‑1 (MQ=255) ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg < 1:10902180/68‑1 (MQ=255) ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg < 1:1350801/68‑1 (MQ=255) ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg < 1:20284181/68‑1 (MQ=255) ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc > 1:7311228/1‑67 (MQ=255) ccGGTTGGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGTCCGATGCACGCGcc < 1:23854686/68‑1 (MQ=255) ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc < 1:37917634/68‑1 (MQ=255) ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc < 1:42594991/68‑1 (MQ=255) ccGGTGCGAAATTAACCGATGGGGCCGCGGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc < 1:44488910/68‑1 (MQ=255) cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa > 1:20879531/1‑68 (MQ=255) cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa > 1:36511706/1‑68 (MQ=255) cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa < 1:43005513/68‑1 (MQ=255) ggTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAg > 1:37705086/1‑68 (MQ=255) ggTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAg > 1:37185581/1‑68 (MQ=255) tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGt < 1:45591222/67‑1 (MQ=255) tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGt < 1:1505643/67‑1 (MQ=255) tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTa > 1:13988686/1‑68 (MQ=255) aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCTGTAGAAAc > 1:6149220/1‑67 (MQ=255) aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc > 1:813036/1‑67 (MQ=255) aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc > 1:26280178/1‑67 (MQ=255) aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc > 1:34806263/1‑67 (MQ=255) aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc > 1:34027647/1‑67 (MQ=255) ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc < 1:11169246/68‑1 (MQ=255) ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc < 1:35438593/68‑1 (MQ=255) ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGc > 1:35175961/1‑67 (MQ=255) ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGc > 1:25273483/1‑67 (MQ=255) tACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGccc < 1:10086128/68‑1 (MQ=255) aCCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCg < 1:30417248/68‑1 (MQ=255) ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCga > 1:18135768/1‑68 (MQ=255) ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCga > 1:50236165/1‑68 (MQ=255) gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga < 1:49737514/68‑1 (MQ=255) gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga > 1:1685692/1‑68 (MQ=255) gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga < 1:31584758/68‑1 (MQ=255) gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga > 1:41971311/1‑68 (MQ=255) catctgtcatacggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAAc < 1:47844625‑M1/34‑1 (MQ=255) gggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACg > 1:16349963/1‑68 (MQ=255) gggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACg > 1:45027807/1‑68 (MQ=255) ggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt > 1:50887928/1‑68 (MQ=255) ggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt > 1:26013267/1‑68 (MQ=255) gCCTCCGGCCAGCGCTTCTGGACCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt < 1:17876919/67‑1 (MQ=255) ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCCGTAGAAACGCCCGAGCATCGTGc > 1:18870988/1‑68 (MQ=255) ccGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATc < 1:33696260/68‑1 (MQ=255) gCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt > 1:19910563/1‑68 (MQ=255) ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTg > 1:22468057/1‑68 (MQ=255) ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTg > 1:32365432/1‑68 (MQ=255) ggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:24391135‑M1/46‑1 (MQ=255) gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTa > 1:4724009/1‑67 (MQ=255) tGGCCCCACATGGCCGATGCACGCGCCAGTAGAAGCGCCCGAGAAACGTGCATCGGTGATTAACGaa > 1:29987595/1‑67 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:8973016/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:29464097/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:36907597/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:51288958/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:31087607/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:11900642/1‑68 (MQ=255) cccACATGGCCTATGCACGCGCCAGTAGTAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:48833387/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:34438504/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:9385883/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:40818395/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:39727627/68‑1 (MQ=255) ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:10430915/1‑66 (MQ=255) ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:14562593/1‑66 (MQ=255) ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:5653677/1‑66 (MQ=255) caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt > 1:48342900/1‑67 (MQ=255) aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa > 1:18422770/1‑67 (MQ=255) tGGCCGATGCACGCTCCAGTAGAAACGACCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:19369509/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:32698945/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:8561907/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:6907201/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:2878997/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:45963691/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:39508945/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:40271389/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:42361563/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:44074116/68‑1 (MQ=255) gCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:12255939/1‑68 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:49982202‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:43423852‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:23116362‑M1/68‑1 (MQ=255) | TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA > CP009273/4512208‑4512342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |