New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4613733 =617 (1.000)5 (0.010) 4/100 NT 0.90% coding (202/1017 nt) lplA lipoate‑protein ligase A
?CP009273 4613760 = 549 (0.990)coding (175/1017 nt) lplA lipoate‑protein ligase A
Rejected: Frequency below/above cutoff threshold.

Only 100 of 901 total aligned reads displayed.

ATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCAA  >  CP009273/4613666‑4613798
                                                                   |                                                                 
 tctggcgcaatgccgacacggtagtaattggtcgcgcgcagaacccgtggaaagagtgtaatacccg                                                                   <  1:8827608‑M1/1‑1 (MQ=255)
 tctggcgcaatgccgacacggtagtaattggtcgcgcgcagaacccgtggaaagagtgtaatacccg                                                                   <  1:5097175‑M1/1‑1 (MQ=255)
  ctggcgcaatgccgacacggtagtaattggtcgcgcgcagaacccgtggaaagagtgtaatacccggc                                                                 >  1:47311093‑M1/66‑68 (MQ=255)
   aaGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCg                                                                >  1:19348837/1‑68 (MQ=255)
    ggcgcaatgccgacacggtagtaattggtcgcgcgcagaacccgtggaaagagtgtaatacccggcgg                                                               >  1:31703417‑M1/64‑68 (MQ=255)
    aGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:10473799/1‑68 (MQ=255)
    aGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:36724481/1‑68 (MQ=255)
    aGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:46583209/1‑68 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:30097369/1‑67 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:41641088/1‑67 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:40561889/1‑67 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:14287179/1‑67 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:26475056/1‑67 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:18061867/1‑67 (MQ=255)
     ggTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCgg                                                               >  1:12758534/1‑67 (MQ=255)
      cgcaatgccgacacggtagtaattggtcgcgcgcagaacccgtggaaagagtgtaatacccGGCGGa                                                              >  1:36221351‑M1/62‑67 (MQ=255)
      cgcaatgccgacacggtagtaattggtcgcgcgcagaacccgtggaaagagtgtaatacccGGCGGa                                                              >  1:24790340‑M1/62‑67 (MQ=255)
       tAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGa                                                              <  1:22151944/66‑1 (MQ=255)
        aaaGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACg                                                            <  1:37394451/67‑1 (MQ=255)
        aaaGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACg                                                            <  1:27272677/67‑1 (MQ=255)
        aaaGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGt                                                           <  1:33582823/68‑1 (MQ=255)
        aaaGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGt                                                           <  1:11606776/68‑1 (MQ=255)
            cAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCCCCGCTACTGCGCCGCGCCAGGCGGACGTTa                                                         >  1:17231019/1‑66 (MQ=255)
            cAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCCGGCGGACGTTa                                                         >  1:34110599/1‑66 (MQ=255)
             aGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTAt                                                        <  1:9567286/66‑1 (MQ=255)
             aGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTAt                                                        <  1:35322700/66‑1 (MQ=255)
             aGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTAt                                                        <  1:45108910/66‑1 (MQ=255)
             aGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTAt                                                        <  1:20584862/66‑1 (MQ=255)
                tATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTAtcttct                                                   >  1:28828309/1‑68 (MQ=255)
                 aTTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGGTAtcttct                                                   >  1:13428638/1‑67 (MQ=255)
                  ttGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATcttctt                                                  >  1:23445531/1‑67 (MQ=255)
                      cGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATc                                             <  1:11294685/68‑1 (MQ=255)
                          aTCGTGGAACACCGCGCCGCCCCCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCCTccgcc                                         >  1:8341918/1‑68 (MQ=255)
                          aTCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATccgcc                                         >  1:6492732/1‑68 (MQ=255)
                           tCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATccgccg                                        >  1:49194527/1‑68 (MQ=255)
                           tCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATccgc                                          <  1:30575667/66‑1 (MQ=255)
                            cGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCgg                                       <  1:16803092/68‑1 (MQ=255)
                            cGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCgg                                       <  1:42923603/68‑1 (MQ=255)
                            cGTGGAACACCGCGACGCCACCGCTACTGCGCCGAGCCAGGCGGACGTTATCTTCTTCCATCCGCCgg                                       <  1:21772475/68‑1 (MQ=255)
                            agTGGAAGACCGCGCCGCCTCCTCTACTGCGGCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCgg                                       <  1:37841933/67‑1 (MQ=255)
                               ggAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGt                                     <  1:43794386/67‑1 (MQ=255)
                               ggAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGt                                     <  1:10880301/67‑1 (MQ=255)
                               ggAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGt                                     <  1:49372635/67‑1 (MQ=255)
                               ggAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGt                                     <  1:31365860/67‑1 (MQ=255)
                                gAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   >  1:25368012/1‑68 (MQ=255)
                                gAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   >  1:15302421/1‑68 (MQ=255)
                                 aaCACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   <  1:18905250/67‑1 (MQ=255)
                                 aaCACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   <  1:13765019/67‑1 (MQ=255)
                                 aaCACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   <  1:14877842/67‑1 (MQ=255)
                                 aaCACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   <  1:12404626/67‑1 (MQ=255)
                                 aaCACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAt                                   <  1:21279449/67‑1 (MQ=255)
                                  acacCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAtt                                  >  1:45738457/1‑67 (MQ=255)
                                  acacCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAtt                                  >  1:44146405/1‑67 (MQ=255)
                                  acacCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAtt                                  >  1:632279/1‑67 (MQ=255)
                                  acacCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAtt                                  >  1:17695114/1‑67 (MQ=255)
                                  acacCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAtt                                  >  1:22669831/1‑67 (MQ=255)
                                  acacCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTAtt                                  >  1:29780/1‑67 (MQ=255)
                                   cacCGCGCCGCCACCGCTACTGTGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTac                                <  1:27835490/68‑1 (MQ=255)
                                    acCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTac                                >  1:11998954/1‑67 (MQ=255)
                                    acCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTac                                >  1:32472968/1‑67 (MQ=255)
                                    acCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTac                                >  1:19701043/1‑67 (MQ=255)
                                    acCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCAGCCGGGTATTac                                >  1:1309231/1‑67 (MQ=255)
                                      cgcgCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACAct                             <  1:23154137/68‑1 (MQ=255)
                                       gcgcCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTacac                              >  1:7732805/1‑66 (MQ=255)
                                         gccgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACActct                           <  1:48082961/67‑1 (MQ=255)
                                         gccgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACActct                           <  1:32947507/67‑1 (MQ=255)
                                         gccgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCtt                          >  1:25856168/1‑68 (MQ=255)
                                           cgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCttt                         <  1:38058705/67‑1 (MQ=255)
                                           cgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCttt                         <  1:26835691/67‑1 (MQ=255)
                                           cgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCttt                         <  1:26002481/67‑1 (MQ=255)
                                           cgccACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCttt                         <  1:1850642/67‑1 (MQ=255)
                                              cACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCa                      <  1:29470408/67‑1 (MQ=255)
                                              cACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCa                      <  1:40069778/67‑1 (MQ=255)
                                               aCCGCTACTGCGCCGCGCCAGGCGGACGTGATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACg                    >  1:30954012/1‑68 (MQ=255)
                                                 cGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACggg                  <  1:28365124/68‑1 (MQ=255)
                                                 cGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACggg                  <  1:41332136/68‑1 (MQ=255)
                                                 cGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACggg                  <  1:42002312/68‑1 (MQ=255)
                                                   cTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGt                 >  1:10020743/1‑67 (MQ=255)
                                                   cTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGt                 >  1:7374068/1‑67 (MQ=255)
                                                    tACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGt                 >  1:48496721/1‑66 (MQ=255)
                                                     aCTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGt                 >  1:5981564/1‑65 (MQ=255)
                                                       tGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTgc            >  1:43583373/1‑68 (MQ=255)
                                                          gccgcgccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTgcgc          >  1:32102288/1‑67 (MQ=255)
                                                          gccgcgccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTgcgc          >  1:49941026/1‑67 (MQ=255)
                                                          gccgcgccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTgcgc          >  1:50276345/1‑67 (MQ=255)
                                                          gccgcgccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTgcgc          >  1:38630161/1‑67 (MQ=255)
                                                          gccgcgccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTgcgc          >  1:35892608/1‑67 (MQ=255)
                                                            cgcgccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGcgcgcg       <  1:42659889/68‑1 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAcc    >  1:23897656/1‑68 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAcc    <  1:46178886/68‑1 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAcc    <  1:21007724/68‑1 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAcc    <  1:2011353/68‑1 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAcc    <  1:6914463/68‑1 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAcc    >  1:39624110/1‑68 (MQ=255)
                                                               gccAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGAc     <  1:44639877/67‑1 (MQ=255)
                                                                 cAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCaa  <  1:15827241/68‑1 (MQ=255)
                                                                 cAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCaa  <  1:530092/68‑1 (MQ=255)
                                                                 cAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCaa  <  1:34824213/68‑1 (MQ=255)
                                                                 cAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCaa  <  1:39154745/68‑1 (MQ=255)
                                                                 cAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCaa  <  1:4702422/68‑1 (MQ=255)
                                                                   |                                                                 
ATAAAGGTAAAGCAGGTATTGCCGAGATCGTGGAACACCGCGCCGCCACCGCTACTGCGCCGCGCCAGGCGGACGTTATCTTCTTCCATCCGCCGGGTATTACACTCTTTCCACGGGTTCTGCGCGCGACCAA  >  CP009273/4613666‑4613798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.