| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 529 (0.850) | 910 (1.470) | 79/112 | NT | 63.2% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
Only 100 of 1706 total aligned reads displayed.
ATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAA > CP009273/360037‑360171 | aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCa > 1:5306907/1‑68 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCaa > 1:7785755/1‑68 (MQ=255) aacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaa < 1:49685048‑M1/2‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:36110414/68‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat < 1:26531290‑M1/3‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat > 1:50620392‑M1/66‑68 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaat < 1:17610649‑M1/3‑1 (MQ=255) acagataaaacgaaaggcccagtctgtcgactgagccgttcgtgttatttgatgcgtggggaattaat < 1:45027964‑M1/3‑1 (MQ=255) ataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt < 1:29897184‑M1/4‑1 (MQ=255) taaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTc > 1:46964959‑M1/61‑65 (MQ=255) taaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg < 1:3014577‑M1/8‑1 (MQ=255) taaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg > 1:49253869‑M1/61‑68 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc < 1:44266153/65‑1 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:25268599/1‑68 (MQ=255) acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAg > 1:11011668‑M1/57‑68 (MQ=255) acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAg > 1:39015235‑M1/57‑68 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggatttAATTCCTGGCAGt < 1:21473646‑M1/13‑1 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt < 1:6034086‑M1/13‑1 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt > 1:36955850‑M1/56‑68 (MQ=255) cgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGt > 1:48107715‑M1/56‑68 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt > 1:44605379/1‑68 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:40189685/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:14639514/68‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGATGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:38604953/1‑68 (MQ=255) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggc < 1:2410836‑M1/20‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:28522597/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:19286162/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:8618241/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:46283284/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:9500946/1‑68 (MQ=255) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcg > 1:4598539‑M1/48‑68 (MQ=255) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggc > 1:19799263‑M1/48‑67 (MQ=255) caggctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg > 1:29506111‑M1/47‑68 (MQ=255) tctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg < 1:13122425‑M1/25‑1 (MQ=255) ctttcgactgagcctttcgttttatttgattcctgggtaattAATTCCTGGCAGTTTATggcggg > 1:22486088‑M1/43‑65 (MQ=255) ctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg < 1:30621224‑M1/25‑1 (MQ=255) ctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg < 1:6627895‑M1/25‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:13673436/1‑67 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:10008529‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:42627307‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:31957902‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:27415978‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:1885852‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:15119364‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 1:7253202‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGAAGTTTATGGCGCGCGTCCTg < 1:16770364‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTCGCAGTTTATGGCGGGCGTCCTg < 1:38251248‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTACTGGCAGTTTATGGCGGGCGTCCTg < 1:2342895‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTACTGGCAGTTTATGGCGGGCGTCCTg < 1:43850747‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTACTGGATGTTTATGGCGGGAgtccat < 1:41144308‑M1/30‑3 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTAATGTAAGTTTATGGCGAGAGTCCTg < 1:24937177‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTAATGGCAGTTTATGGCGGACGTCCTg < 1:15611995‑M1/30‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATAAATAGCTGTTTAAGGCGGGCgtccag < 1:12506733‑M1/30‑3 (MQ=255) ctgcgcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc < 1:46517309‑M1/33‑1 (MQ=255) gatACGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc < 1:1045582/68‑1 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc < 1:32327082/68‑1 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc > 1:18000199‑M1/34‑68 (MQ=255) gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc > 1:47589476‑M1/34‑68 (MQ=255) gcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGcc > 1:31642943‑M1/32‑67 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:37265274‑M1/30‑67 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc < 1:16047866‑M1/38‑1 (MQ=255) tttcgttttattttatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:21829300‑M1/29‑68 (MQ=255) tttcgttttatttgatgcctgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:42935424‑M1/29‑68 (MQ=255) tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:41500504‑M1/29‑68 (MQ=255) tagcggtttatttcatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:31177898‑M1/29‑68 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:12799094/1‑68 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:51048284/1‑66 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc < 1:39922047/66‑1 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc < 1:26218648/66‑1 (MQ=255) aaaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg < 1:35135243/68‑1 (MQ=255) aaaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg < 1:2686251/68‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAAGTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAACCTCCggg > 1:3782773/1‑67 (MQ=255) tatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc > 1:34744007‑M1/21‑68 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt > 1:43392745/1‑68 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt > 1:29124352/1‑68 (MQ=255) tGAGAATTCCCATCCCCCATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt < 1:11956144/68‑1 (MQ=255) gatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc > 1:28049280‑M1/16‑68 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:48693990/67‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCtt > 1:27687001‑M1/14‑68 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt > 1:17145366‑M1/14‑67 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGctta < 1:4052526‑M1/56‑2 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc > 1:41941226‑M1/13‑68 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc < 1:3653583‑M1/56‑1 (MQ=255) gcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCAGTTGCTTc < 1:8937856‑M1/56‑1 (MQ=255) aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCtt < 1:20743135/67‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc > 1:14139687/1‑68 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc > 1:35501241/1‑68 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc < 1:11430475/68‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:45514992/1‑68 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:34240468/1‑68 (MQ=255) ggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:25729819‑M1/7‑67 (MQ=255) ggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:33624980‑M1/7‑67 (MQ=255) ggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACg < 1:22843540‑M1/62‑1 (MQ=255) ggaattAATTCCTGGCAGTTTATCGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAc > 1:39386518‑M1/7‑67 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt < 1:50145881/68‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt < 1:8226908/68‑1 (MQ=255) aattAATTCCTGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt > 1:5667824‑M1/5‑67 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCa > 1:32948594/1‑68 (MQ=40) atAAATCCTGGCAGTTTATGGCGGGCGGCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCa > 1:18403889‑M1/3‑68 (MQ=255) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa < 1:245535/68‑1 (MQ=37) | ATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAA > CP009273/360037‑360171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |