| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2402276 | NA (NA) | 16 (0.030) | 7/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 618 total aligned reads displayed.
CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG > CP009273/2402211‑2402343 | cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgaga < 1:18945723/68‑1 (MQ=255)cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgaga < 1:37181677/68‑1 (MQ=255)cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgaga < 1:48434734/68‑1 (MQ=255)cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgaga < 1:25438031/68‑1 (MQ=255)cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgag < 1:11474537/67‑1 (MQ=255)cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgag < 1:17562606/67‑1 (MQ=255) tttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGAt > 1:21023440/1‑68 (MQ=255) gAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGc < 1:51298251/68‑1 (MQ=255) gAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGc < 1:29606977/68‑1 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:31299415/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:20534370/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:22558584/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:23578395/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:24265845/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:250367/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:1006074/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:47990582/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:36136961/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:3856935/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:39709925/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:46802476/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:40357788/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:43633501/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:10655483/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:18026460/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:13160244/1‑68 (MQ=255) cAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAt < 1:33082720‑M2/67‑2 (MQ=255) cAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAt < 1:15421131‑M2/67‑2 (MQ=255) ttCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccggc < 1:43993765‑M2/68‑7 (MQ=255) ttCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccggc < 1:34303675‑M2/68‑7 (MQ=255) gcgcgTTTCCTTTCTGGTTATCATCAGCTGAAATCTTAATATCACTGCCGGAGATTGCAtccggcagt > 1:29097115‑M2/1‑59 (MQ=255) cgTTTCCTTTCTGGTTATCATCGGCTGTAATGTTAATTTCACTGCCGGAGATAGCATCCGGCAGCGtt > 1:47439794/1‑68 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAtgcaatctccggcagtgaaattaagatt > 1:16144015‑M1/1‑40 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGca > 1:5659520/1‑66 (MQ=255) cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCcac < 1:6753450/68‑1 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAtgcaatctccggcagtgaaattaagattaca > 1:26724112‑M1/1‑37 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACaa > 1:32476893/1‑68 (MQ=255) ggTTATCATCAGCTGTAATCTTAAATTCACTGCCGGAGATTGCAtccggcagtgaaattaagattaca > 1:21369325‑M2/1‑44 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagc > 1:49181395‑M2/1‑41 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:9035282/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:39197789/68‑1 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAtgcaatctccggcagtgaaattaagattacagctgatg > 1:7805982‑M1/1‑30 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:8682197/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga > 1:27251918/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga > 1:30159484/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga > 1:11810137/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:27942500/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:25810159/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:8393236/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:2453012/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:31634784/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:33661046/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg < 1:30982345/68‑1 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:6170165/1‑68 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccaga > 1:15830546‑M2/1‑28 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca > 1:7267352/1‑68 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca < 1:34847983/68‑1 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca > 1:12861437/1‑68 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:20061337/68‑1 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:15724504/68‑1 (MQ=255) tCTTACTTACCCAGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccagaaa > 1:41725108‑M2/1‑26 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:14155902/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:42282481/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:40704189/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:11029833/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:38162946/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:28486302/1‑68 (MQ=255) cTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatca > 1:37916736/1‑68 (MQ=255) cTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatca > 1:26189955/1‑68 (MQ=255) tCACTGCCGTAGATTGCATCCGGCAGCGTTATCAAGAAACATTGACCTGATGATGTCATCATAAGTaa > 1:43099996/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:7529657/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:45384784/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:5018325/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:10370489/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:21664612/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:925333/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:13798528/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:32873066/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:49884392/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:42563708/1‑68 (MQ=255) gCCGGAtgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaacgcgcgaa < 1:14594474‑M1/68‑63 (MQ=255) gCCGGAtgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaacgcgcgaa < 1:19607628‑M1/68‑63 (MQ=255) gCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGCCCTGATGATGTCATCATACGTAAGGTc > 1:8018890/1‑67 (MQ=255) gCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa < 1:23686543/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:50715756/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:14902030/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1651995/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:17087936/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1842551/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:2229215/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:28778783/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:31932796/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:33429190/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:47624907/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:35834112/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:39971192/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:4652527/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:44400518/68‑1 (MQ=255) atgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaacgcgcgaacttg < 1:44991975‑M1/67‑67 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt < 1:41341771/67‑1 (MQ=255) | CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG > CP009273/2402211‑2402343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |